Testing updated make_forcing file #2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: make the croco forcing | |
| # make the boundary forcing for a particular domain | |
| # we don't need to make surface forcing since we're using the ONLINE cpp key | |
| # (the blk files are already reformatted in get_forcing.yml) | |
| on: | |
| workflow_call: | |
| inputs: | |
| RUN_DATE: | |
| description: 'time of T0 of the model run in format YYYYMMDD_HH - defined dynamically in run_ops.yml' | |
| required: true | |
| type: string | |
| BRANCH_REF: | |
| description: 'what branch are we on - defined dynamically in run_ops.yml' | |
| required: true | |
| type: string | |
| RUNNER_NAME: | |
| description: 'specify the runner name to determine what server we are running on' | |
| required: true | |
| type: string | |
| MODEL: | |
| description: 'directory name used to define the model e.g.croco_v1.3.1' | |
| required: true | |
| type: string | |
| DOMAIN: | |
| description: 'directory name used to define the domain e.g. sa_west_02' | |
| required: true | |
| type: string | |
| OGCM: | |
| description: 'name of boundary forcing e.g. MERCATOR' | |
| required: true | |
| type: string | |
| HDAYS: | |
| description: 'number of hindcast days (integer) from T0' | |
| required: true | |
| type: string | |
| FDAYS: | |
| description: 'number of forecast days (integer) from T0' | |
| required: true | |
| type: string | |
| env: | |
| # define the directory names for this configuration | |
| BRANCH_DIR: /home/somisana/ops/${{ inputs.BRANCH_REF }} | |
| DATE_DIR: /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }} | |
| CONFIG_DIR: /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/${{ inputs.DOMAIN }}/${{ inputs.MODEL }} | |
| INPUT_DIR: /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/downloaded_data/${{ inputs.OGCM }} | |
| OUTPUT_DIR: /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/${{ inputs.DOMAIN }}/${{ inputs.MODEL }}/${{ inputs.OGCM }} | |
| jobs: | |
| make_ogcm: | |
| runs-on: ${{ inputs.RUNNER_NAME }} | |
| steps: | |
| - name: make temporary directory for the reformatted OGCM file | |
| # fyi this is not needed for the blk files as the reformated blk file is saved in the directory where the data are downloaded | |
| run: | | |
| rm -rf ${{ env.CONFIG_DIR }}/${{ inputs.OGCM }}/tmp_for_croco | |
| mkdir -p ${{ env.CONFIG_DIR }}/${{ inputs.OGCM }}/tmp_for_croco | |
| chown -R :runners ${{ env.CONFIG_DIR }}/${{ inputs.OGCM }}/tmp_for_croco | |
| chmod -R 775 ${{ env.CONFIG_DIR }}/${{ inputs.OGCM }}/tmp_for_croco | |
| - name: Format RUN_DATE | |
| id: format_date | |
| run: | | |
| run_date=${{ inputs.RUN_DATE }} | |
| run_date_formatted="'${run_date:0:4}-${run_date:4:2}-${run_date:6:2} ${run_date:9:2}'" | |
| echo "value=$run_date_formatted" >> $GITHUB_OUTPUT | |
| - name: generate the initial file | |
| id: make_ini_ogcm_file | |
| docker run | |
| --rm | |
| -v ${{ env.INPUT_DIR }}:/home/matlab/somisana | |
| -v ${{ env.OUTPUT_DIR }}:/home/matlab/somisana | |
| ghcr.io/saeon/somisana-croco_cli_${{ inputs.BRANCH_REF }}:latest | |
| make_ini_fcst | |
| --input_file /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/downloaded_data/${{ inputs.OGCM }}/${{ inputs.OGCM }}_${{ inputs.RUN_DATE }}.nc | |
| --output_dir /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/${{ inputs.DOMAIN }}/${{ inputs.MODEL }}/${{ inputs.OGCM }}/ | |
| --run_date ${{ inputs.RUN_DATE }} | |
| --hdays ${{ inputs.HDAYS }} | |
| --Yorig 2000 | |
| - name: generate the OGCM forcing file (and ini file which will only be used if a suitable restart file isn't available) | |
| id: make_ogcm_file | |
| run: | | |
| docker run | |
| --rm | |
| -v ${{ env.INPUT_DIR }}:/home/matlab/somisana | |
| -v ${{ env.INPUT_DIR }}:/home/matlab/somisana | |
| ghcr.io/saeon/somisana-croco_matlab_${{ inputs.BRANCH_REF }}:latest | |
| make_bry_fcst | |
| --input_file /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/downloaded_data/${{ inputs.OGCM }}/${{ inputs.OGCM }}_${{ inputs.RUN_DATE }}.nc | |
| --output_dir /home/somisana/ops/${{ inputs.BRANCH_REF }}/${{ inputs.RUN_DATE }}/${{ inputs.DOMAIN }}/${{ inputs.MODEL }}/${{ inputs.OGCM }}/ | |
| --run_date ${{ inputs.RUN_DATE }} | |
| --hdays ${{ inputs.HDAYS }} | |
| --fdays ${{ inputs.FDAYS }} | |
| --Yorig 2000 | |
| # -c "cd /home/matlab/somisana/${{ inputs.DOMAIN }}/${{ inputs.MODEL }}/${{ inputs.OGCM }} && matlab -nodisplay -nosplash -nodesktop -r \"start; make_${{ inputs.OGCM }}_ocims(${{ steps.format_date.outputs.value }},${{ inputs.HDAYS }},1); exit;\"" |