FIX: use inceptionv4 from timm (#69)

* use inceptionv4 from timm

This changes the model name from inceptionv4 to inception_v4 and allows
us to remove the inceptionv4 implementation from the codebase.

* use inception_v4nobn with help of timm

Use the timm implementation but remove batchnorm (and add bias to the
conv layer before batchnorm).

This changes the name from inceptionv4nobn to inception_v4nobn.

* rm unused default_cfgs

* ignore timm types

setup.cfg

@@ -89,7 +89,7 @@ ignore_missing_imports = True
 ignore_missing_imports = True
 [mypy-pandas]
 ignore_missing_imports = True
-[mypy-timm]
+[mypy-timm.*]
 ignore_missing_imports = True
 [mypy-scipy.stats]
 ignore_missing_imports = True

tests/test_all.py

@@ -216,9 +216,9 @@ def test_cli_run_args(tmp_path: Path):
             350,
             144,
         ),
-        # Inceptionv4 TCGA-BRCA-v1
+        # Inception_v4 TCGA-BRCA-v1
         (
-            "inceptionv4",
+            "inception_v4",
             "TCGA-BRCA-v1",
             ["notumor", "tumor"],
             [0.9564113020896912, 0.043588679283857346],
@@ -227,7 +227,7 @@ def test_cli_run_args(tmp_path: Path):
         ),
         # Inceptionv4nobn TCGA-TILs-v1
         (
-            "inceptionv4nobn",
+            "inception_v4nobn",
             "TCGA-TILs-v1",
             ["notils", "tils"],
             [1.0, 3.427359524660334e-12],