Add interface for per element operations #333
Workflow file for this run
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| name: run-coverage | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| schedule: | |
| - cron: '0 8 * * *' #every day at 8am | |
| jobs: | |
| runCoverage: | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| compiler: [g++] | |
| language: ['cpp'] | |
| build_type: [Debug] | |
| # Permissions needed for coverage paste | |
| permissions: | |
| #security-events: write | |
| pull-requests: write | |
| steps: | |
| - name: Install CMake | |
| run: | | |
| sudo apt-get update -yq | |
| sudo apt-get install -yq cmake | |
| cmake --version | |
| - name: Install additional dependencies | |
| run: | | |
| sudo apt-get install -yq doxygen | |
| sudo apt-get install -yq graphviz | |
| sudo apt-get install -yq libhdf5-mpi-dev | |
| ## Kokkos | |
| - name: Kokkos Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: kokkos/kokkos | |
| path: kokkos | |
| ref: develop | |
| - name: Kokkos Configure CMake | |
| shell: bash | |
| run: cmake -S $GITHUB_WORKSPACE/kokkos -B ${{runner.workspace}}/build-kokkos | |
| -DCMAKE_CXX_COMPILER=${{ matrix.compiler }} | |
| -DKokkos_ENABLE_SERIAL=ON | |
| -DKokkos_ENABLE_OPENMP=OFF | |
| -DKokkos_ENABLE_DEBUG=ON | |
| -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-kokkos/install | |
| - name: Kokkos Build | |
| shell: bash | |
| run: cmake --build ${{runner.workspace}}/build-kokkos --parallel 2 --target install | |
| ## Omegah | |
| - name: Omega_h Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: sandialabs/omega_h | |
| path: omegah | |
| - name: Omega_h Configure CMake | |
| shell: bash | |
| run: cmake -S $GITHUB_WORKSPACE/omegah -B ${{runner.workspace}}/build-omegah | |
| -DCMAKE_CXX_COMPILER=${{ matrix.compiler }} | |
| -DBUILD_SHARED_LIBS=OFF | |
| -DOmega_h_USE_Kokkos=ON | |
| -DKokkos_PREFIX=${{runner.workspace}}/build-kokkos/install/lib/cmake | |
| -DOmega_h_USE_MPI=OFF | |
| -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-omegah/install | |
| - name: Omega_h Build | |
| shell: bash | |
| run: cmake --build ${{runner.workspace}}/build-omegah --parallel 2 --target install | |
| ## Cabana | |
| - name: Cabana Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: ECP-copa/Cabana | |
| path: cabana | |
| - name: Cabana Configure CMake | |
| shell: bash | |
| run: cmake -S $GITHUB_WORKSPACE/cabana -B ${{runner.workspace}}/build-cabana | |
| -DCMAKE_CXX_COMPILER=${{matrix.compiler}} | |
| -DCMAKE_BUILD_TYPE=${{matrix.build_type}} | |
| -DKokkos_DIR=${{runner.workspace}}/build-kokkos/install/lib/cmake/Kokkos | |
| -DCabana_ENABLE_MPI=OFF | |
| -DCabana_ENABLE_CAJITA=OFF | |
| -DCabana_ENABLE_TESTING=OFF | |
| -DCabana_ENABLE_EXAMPLES=OFF | |
| -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-cabana/install | |
| - name: Cabana Build | |
| shell: bash | |
| run: cmake --build ${{runner.workspace}}/build-cabana --parallel 2 --target install | |
| ## MeshFields | |
| - name: MeshFields Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: SCOREC/meshFields | |
| path: meshFields | |
| - name: Install lcov 1.16 | |
| shell: bash | |
| run: sudo apt-get install -yq lcov | |
| - name: MeshFields Configure CMake | |
| shell: bash | |
| run: cmake -S $GITHUB_WORKSPACE/meshFields -B ${{runner.workspace}}/build-meshFields | |
| -D meshFields_ENABLE_COVERAGE_BUILD=ON | |
| -D CMAKE_BUILD_TYPE=${{matrix.build_type}} | |
| -DKokkos_ROOT=${{runner.workspace}}/build-kokkos/install | |
| -DCabana_ROOT=${{runner.workspace}}/build-cabana/install | |
| -DOmega_h_ROOT=${{runner.workspace}}/build-omegah/install | |
| -DCMAKE_INSTALL_PREFIX=${{runner.workspace}}/build-meshFields/install | |
| -DLCOV_SYSTEM_EXCLUDE_PATHS="/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/*\;/usr/include/*" | |
| - name: Run MeshFields for coverage | |
| working-directory: ${{runner.workspace}}/build-meshFields | |
| shell: bash | |
| run: | | |
| make | |
| make coverage | |
| #Uploads coverage directory with lcov generated HTML | |
| - name: Upload lcov report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage | |
| path: ${{runner.workspace}}/build-meshFields/coverage | |
| # Generate a report readable from console ------------------------------------- | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Convert Lcov to Cobertura | |
| run: | | |
| pip install lcov_cobertura | |
| lcov_cobertura ${{runner.workspace}}/build-meshFields/coverage.info | |
| - name: Code Coverage Summary Report | |
| uses: irongut/[email protected] | |
| with: | |
| filename: coverage.xml | |
| format: markdown | |
| output: both | |
| - name: Add Coverage PR Comment | |
| uses: marocchino/sticky-pull-request-comment@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| recreate: true | |
| path: code-coverage-results.md |