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feat: always build initialization problem #3347

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I'll link issues this closes once the PR is ready and I've added tests for them.

@AayushSabharwal AayushSabharwal marked this pull request as ready for review January 24, 2025 07:42
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The updated initialization was causing problems for linearization. #3348 already fixed initialization in linearization_function so hacking something here only for it to be overwritten is pointless. #3348 is now merged into this PR.

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