add pbtk

[Kincekara]

PacBio BAM toolkit. One of the components related with #926

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[erinyoung]

It looks like the tests worked

#9 [test 1/2] RUN wget -q --no-check-certificate https://downloads.pacbcloud.com/public/dataset/HiFiViral/Nov_2021/m64012_210821_095651.hifi_reads.bam
#9 DONE 380.8s

#10 [test 2/2] RUN pbindex m64012_210821_095651.hifi_reads.bam &&    zmwfilter --include 1,2,4,8,16 m64012_210821_095651.hifi_reads.bam test.bam &&    zmwfilter --include 18,19,22,24,33 m64012_210821_095651.hifi_reads.bam test2.bam &&    pbindex test.bam &&    pbindexdump test.bam.pbi > test.json &&    bam2fasta -o test test.bam &&    bam2fastq -o test test.bam &&    extracthifi test.bam test.hifi.bam &&    ccs-kinetics-bystrandify test.bam test.bystrand.bam &&    pbmerge test.bam test2.bam > test.merged.bam &&    echo $(ls | grep test)
#10 15.53 test.bam test.bam.pbi test.bystrand.bam test.bystrand.bam.pbi test.fasta.gz test.fastq.gz test.hifi.bam test.json test.merged.bam test2.bam
#10 DONE 15.5s

[erinyoung]

Do these print to stderr?

[Kincekara]

Probably, but I am not sure.

[erinyoung]

Thank you for putting this together!

I don't have any changes to recommend.

[erinyoung]

You can check the status of the deploy here: https://github.com/StaPH-B/docker-builds/actions/runs/8482703034