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Fix hybrid switching #853

Merged
merged 21 commits into from
Aug 9, 2022
Merged

Fix hybrid switching #853

merged 21 commits into from
Aug 9, 2022

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briandrawert
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@briandrawert
Changed how CV is calculated, now using time-averaged. Corrected CV c…
8900ef3 
…alculation, now using sqrt. Changed default CV tol=0.005
@briandrawert
clean up
6b5e59f
@briandrawert briandrawert self-assigned this Jul 26, 2022
@briandrawert briandrawert added the bug Something isn't working label Jul 26, 2022
@briandrawert briandrawert added this to the 1.7.0 milestone Jul 26, 2022
@briandrawert briandrawert linked an issue Jul 26, 2022 that may be closed by this pull request
Hybrid switching sensitivity may have been lost #849
Closed
@briandrawert briandrawert modified the milestones: 1.7.0, 1.6.10 Jul 26, 2022
@briandrawert briandrawert marked this pull request as draft July 26, 2022 17:46
briandrawert and others added 12 commits July 26, 2022 11:44
@briandrawert
Fixing the tau step size selection code, needed reactants and product…
91a6105 
…s for reactions of the type A+B->B+C, which have a net stoich of zero
@briandrawert
Using time-averaged CV for TauHybridCSolver, and swtich_tol is now pa…
8637d1e 
…ssed correctly to solver
@briandrawert
for switch_tol=0.005, the C and python solvers differ
59e0c61
@briandrawert
removing the tau step size from hybrid switching calculation
9b5c135
@briandrawert
going back to CV_a
2db2140
@briandrawert
Merge branch 'develop' of github.com:StochSS/GillesPy2 into no_tau_in…
0daa2d1 
…_switching_calc
@briandrawert
Fixed bugs in Tau-Hybrid solvers
1d18841
@briandrawert
recucing test runtimr
f73678c
@briandrawert
checking tests
7467d5e
@briandrawert
fixed bug in dependency graph
90c8f72
@briandrawert
re-enabling all integration tests
c94ccdc
@briandrawert
Merge pull request #854 from StochSS/no_tau_in_switching_calc
c7360b1 
Removing tau step size from hybrid  switching calc
@briandrawert briandrawert marked this pull request as ready for review August 1, 2022 21:03
@BryanRumsey BryanRumsey merged commit 076fa18 into develop Aug 9, 2022
@BryanRumsey BryanRumsey deleted the fix_hybrid_switching branch August 9, 2022 18:26
@BryanRumsey BryanRumsey mentioned this pull request Aug 10, 2022
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@BryanRumsey BryanRumsey BryanRumsey approved these changes

@seanebum seanebum seanebum approved these changes

@jtcooper10 jtcooper10 Awaiting requested review from jtcooper10

@kevinsanft kevinsanft Awaiting requested review from kevinsanft

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@briandrawert briandrawert

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Successfully merging this pull request may close these issues.

Hybrid switching sensitivity may have been lost
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@briandrawert @seanebum @BryanRumsey