Issue #14 Current behavior left-click: navigates to gene page, right-…

…click: gives context menu where details option can be selected
SuLab · Jul 19, 2017 · ac0af66 · ac0af66
1 parent 1c353fc
commit ac0af66
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Showing 5 changed files with 25 additions and 5 deletions.
diff --git a/scripts/jbrowse_configuration.py b/scripts/jbrowse_configuration.py
@@ -72,6 +72,10 @@ def generate_tracklist(self):
             "storeClass": "JBrowse/Store/SeqFeature/GFF3",
             "urlTemplate": "{}_genes.gff".format(self.taxid),
             "key": "genes_canvas_mod",
+            "onClick": {
+                "label": "right-click for more options",
+                "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
+            },
             "menuTemplate": [
                 {
                     "label": "View Details",
@@ -82,7 +86,7 @@ def generate_tracklist(self):
                 {
                     "label": "load this gene page",
                     "iconClass": "dijitIconDatabase",
-                    "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); ; return window.parent.location=new_url}"
+                    "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
                 }
             ]
 

diff --git a/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_115713/trackList.json b/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_115713/trackList.json
@@ -32,6 +32,10 @@
       "urlTemplate": "115713_genes.gff",
       "key": "genes_canvas_mod",
       "label": "genes_canvas_mod",
+      "onClick": {
+        "label": "right-click for more options",
+        "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
+      },
       "menuTemplate": [
         {
           "label": "View Details",
@@ -42,7 +46,7 @@
         {
           "label": "load this gene page",
           "iconClass": "dijitIconDatabase",
-          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); ; return window.parent.location=new_url}"
+          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
         }
       ]
     },

diff --git a/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_243161/trackList.json b/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_243161/trackList.json
@@ -32,6 +32,10 @@
       "urlTemplate": "243161_genes.gff",
       "key": "genes_canvas_mod",
       "label": "genes_canvas_mod",
+      "onClick": {
+        "label": "right-click for more options",
+        "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
+      },
       "menuTemplate": [
         {
           "label": "View Details",
@@ -42,7 +46,7 @@
         {
           "label": "load this gene page",
           "iconClass": "dijitIconDatabase",
-          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); ; return window.parent.location=new_url}"
+          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
         }
       ]
     },

diff --git a/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_272561/trackList.json b/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_272561/trackList.json
@@ -32,6 +32,10 @@
       "urlTemplate": "272561_genes.gff",
       "key": "genes_canvas_mod",
       "label": "genes_canvas_mod",
+      "onClick": {
+        "label": "right-click for more options",
+        "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
+      },
       "menuTemplate": [
         {
           "label": "View Details",
@@ -42,7 +46,7 @@
         {
           "label": "load this gene page",
           "iconClass": "dijitIconDatabase",
-          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); ; return window.parent.location=new_url}"
+          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
         }
       ]
     },

diff --git a/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_471472/trackList.json b/wiki/static/wiki/js/JBrowse-1.12.1/sparql_data/sparql_data_471472/trackList.json
@@ -32,6 +32,10 @@
       "urlTemplate": "471472_genes.gff",
       "key": "genes_canvas_mod",
       "label": "genes_canvas_mod",
+      "onClick": {
+        "label": "right-click for more options",
+        "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
+      },
       "menuTemplate": [
         {
           "label": "View Details",
@@ -42,7 +46,7 @@
         {
           "label": "load this gene page",
           "iconClass": "dijitIconDatabase",
-          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); ; return window.parent.location=new_url}"
+          "action": "function( track, feature, div ){var top_url = (window.location != window.parent.location)? document.referrer: document.location.href; var pre_url = top_url.split('/');  var taxid = pre_url[4]; var new_url = ['http:/' , pre_url[2], 'organism', taxid, 'gene', this.feature.data.id].join('/'); return window.parent.location=new_url}"
         }
       ]
     },