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Code for proteomics analysis of MS vs control astrocyte data

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TeresaSteynTeresaSteyn
Delete 1_Proteomics_scripts
Apr 8, 2024
8d4226d · Apr 8, 2024

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5 Commits
Enrichment_dotplot2_subsettedBeforeProcessing.R
Enrichment_dotplot2_subsettedBeforeProcessing.R
Apr 8, 2024
GFAP_ALDH1L1_shared_genes_heatmap.r
GFAP_ALDH1L1_shared_genes_heatmap.r
Apr 8, 2024
Heatmap_ALDH1L1_GFAP_shared_pathways_selectdatabase.r
Heatmap_ALDH1L1_GFAP_shared_pathways_selectdatabase.r
Apr 8, 2024
Heatmap_GFAP_ALDH1L1_shared_pathways_selectdatabase.r
Heatmap_GFAP_ALDH1L1_shared_pathways_selectdatabase.r
Apr 8, 2024
Heatmap_subset_random50_DEGs_ALDH1L1_subsettedBefore.r
Heatmap_subset_random50_DEGs_ALDH1L1_subsettedBefore.r
Apr 8, 2024
Heatmap_subset_random50_DEGs_GFAP_subsettedBefore.r
Heatmap_subset_random50_DEGs_GFAP_subsettedBefore.r
Apr 8, 2024
Number_of_DEPs_ALDH1L1.r
Number_of_DEPs_ALDH1L1.r
Apr 8, 2024
Number_of_DEPs_GFAP.r
Number_of_DEPs_GFAP.r
Apr 8, 2024
Obtain_all_DEGs_from_sig_DEG_file.R
Obtain_all_DEGs_from_sig_DEG_file.R
Apr 8, 2024
Outlier_Detection_Proteomics_script_Astrocytes.R
Outlier_Detection_Proteomics_script_Astrocytes.R
Apr 8, 2024
Outlier_samples_plots.R
Outlier_samples_plots.R
Apr 8, 2024
PCA_plot_ALDH1L1_subsettedBeforeProcessing.R
PCA_plot_ALDH1L1_subsettedBeforeProcessing.R
Apr 8, 2024
PCA_plot_GFAP_subsettedBeforeProcessing.R
PCA_plot_GFAP_subsettedBeforeProcessing.R
Apr 8, 2024
PCA_plots_astrocytes.R
PCA_plots_astrocytes.R
Apr 8, 2024
Process_metadata_Astrocytes.R
Process_metadata_Astrocytes.R
Apr 8, 2024
Proteomics_script_Astrocytes_vsnNorm_GeneNames_outlierRM.R
Proteomics_script_Astrocytes_vsnNorm_GeneNames_outlierRM.R
Apr 8, 2024
Proteomics_script_Astrocytes_vsnNorm_outlierRM_ALDH1L1.R
Proteomics_script_Astrocytes_vsnNorm_outlierRM_ALDH1L1.R
Apr 8, 2024
Proteomics_script_Astrocytes_vsnNorm_outlierRM_GFAP.R
Proteomics_script_Astrocytes_vsnNorm_outlierRM_GFAP.R
Apr 8, 2024
README.md
README.md
Apr 8, 2024
Venn_diagram_GFAP_ALDH1L1_sig_genes.R
Venn_diagram_GFAP_ALDH1L1_sig_genes.R
Apr 8, 2024
Venn_diagram_GFAP_ALDH1L1_sig_genes_subsettedBefore.r
Venn_diagram_GFAP_ALDH1L1_sig_genes_subsettedBefore.r
Apr 8, 2024
Volcano_plots_ALDH1L1_subsettedBefore.r
Volcano_plots_ALDH1L1_subsettedBefore.r
Apr 8, 2024
Volcano_plots_GFAP_subsettedBefore.r
Volcano_plots_GFAP_subsettedBefore.r
Apr 8, 2024

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MSc_Hilary_thesis_code

Code for proteomics analysis of MS vs control astrocyte data

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Code for proteomics analysis of MS vs control astrocyte data

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