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Attempt 2, Zach fixed error.
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3vwylie committed Jul 24, 2023
1 parent e1ae217 commit 21f43b5
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Showing 6 changed files with 63 additions and 1 deletion.
2 changes: 1 addition & 1 deletion src/aslm/config/configuration.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,7 @@ microscopes:
max: None
min: None

joystick_axes: [x,y,z]
joystick_axes: [x, y, z]
x_max: 100000
x_min: -100000
y_max: 100000
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20 changes: 20 additions & 0 deletions test.n5/setup0/timepoint0/s1/attributes.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
{
"blockSize": [
1,
1,
1
],
"compression": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"shuffle": 1,
"type": "blosc"
},
"dataType": "uint16",
"dimensions": [
1,
1,
1
]
}
20 changes: 20 additions & 0 deletions test.n5/setup0/timepoint0/s2/attributes.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
{
"blockSize": [
1,
1,
1
],
"compression": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"shuffle": 1,
"type": "blosc"
},
"dataType": "uint16",
"dimensions": [
1,
1,
1
]
}
20 changes: 20 additions & 0 deletions test.n5/setup0/timepoint0/s3/attributes.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
{
"blockSize": [
1,
1,
1
],
"compression": {
"blocksize": 0,
"clevel": 5,
"cname": "lz4",
"shuffle": 1,
"type": "blosc"
},
"dataType": "uint16",
"dimensions": [
1,
1,
1
]
}
1 change: 1 addition & 0 deletions test.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
<?xml version="1.0" encoding="UTF-8"?><SpimData version="0.2"><BasePath type="relative">.</BasePath><SequenceDescription><ImageLoader format="bdv.n5"><n5 type="relative">test.n5</n5></ImageLoader><ViewSetups><ViewSetup><id>0</id><name>0</name><size>2048 2048 1</size><voxelSize><unit>um</unit><size>6.38 6.38 0.2</size></voxelSize><attributes><illumination>0</illumination><channel>0</channel><tile>0</tile><angle>0</angle></attributes></ViewSetup><Attributes name="illumination"><Illumination><id>0</id><name>0</name></Illumination></Attributes><Attributes name="channel"><Channel><id>0</id><name>0</name></Channel></Attributes><Attributes name="tile"><Tile><id>0</id><name>0</name></Tile></Attributes><Attributes name="angle"><Angle><id>0</id><name>0</name></Angle></Attributes></ViewSetups><Timepoints type="range"><first>0</first><last>0</last></Timepoints></SequenceDescription><ViewRegistrations><ViewRegistration timepoint="0" setup="0"><ViewTransform type="affine"><affine>0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000</affine></ViewTransform></ViewRegistration></ViewRegistrations></SpimData>
1 change: 1 addition & 0 deletions test/config/test_configuration.py
Original file line number Diff line number Diff line change
Expand Up @@ -340,6 +340,7 @@ def stage_section(self, microscope, hardware_type):
"z_offset",
"theta_offset",
"f_offset",
"joystick_axes",
]
type_keys = [
"name",
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