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Stage movement error #81
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I guess that the stage raises some errors, however, when unpickling the error message there is another error happened. I'm not quite sure, but I can help with debugging tomorrow. |
Working through the errors. MesoSPIM software throws it. Their proprietary software throws it. This is not our problem. Working with their engineers to try to solve it.
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There are instructions and example code for handling this type of error and resetting the error code on that stage axis here: https://pypi.org/project/PIPython/. We just have to catch a |
Nice find!
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* #81 Error handling now in place * Wired up moving frames to zarr Co-Authored-By: Dax Collison <[email protected]> * Thread name printing with exception Co-Authored-By: Dax Collison <[email protected]> * Comment Co-Authored-By: Dax Collison <[email protected]> Co-authored-by: Dax Collison <[email protected]>
…ackaging (#113) * #81 Error handling now in place * Wired up moving frames to zarr Co-Authored-By: Dax Collison <[email protected]> * Thread name printing with exception Co-Authored-By: Dax Collison <[email protected]> * Comment Co-Authored-By: Dax Collison <[email protected]> * Moving along on zarr saving Co-Authored-By: Dax Collison <[email protected]> * Update aslm_image_writer.py Co-Authored-By: Dax Collison <[email protected]> * Boolean flags based on stack cycle mode Co-Authored-By: Dax Collison <[email protected]> * Zarr array is now updated with data Still very early and is not ready to be pulled Co-Authored-By: Dax Collison <[email protected]> * Removing for loops to add image to zarr array * Updating copy to zarr function * Updating test for image writer * Basic Setup.py * Synthetic Hardware Test now compatible with structure * Basic Setup.py * Revert "Basic Setup.py" This reverts commit 53385f4. * Fixing path issues for model tests to run * Created dummy model I put the dummy model in the aslm package bc I was having import errors trying to import modules from the test folder. * Updated paths to absolute Can now run aslm --sh in command line after installing and will run program * Adding zarr for github tests * Update dummy model and apply to tests * Removing init from test classes * This will now pass Aslm Analysis test needs to be addressed as its calling an entropy funciton that doesn't exist where it maybe is supposed to Co-authored-by: AdvancedImagingUTSW <[email protected]>
We are receiving this traceback after clicking the stage movement buttons a few times (any stage movement button will do). After we receive this callback, we can no longer move the stage. @annie-xd-wang, do you have any ideas as to what might cause this?
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