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Feature request; comment field #21

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hwmvandeutekom opened this issue Oct 29, 2019 · 2 comments
Closed

Feature request; comment field #21

hwmvandeutekom opened this issue Oct 29, 2019 · 2 comments
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@hwmvandeutekom
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hwmvandeutekom commented Oct 29, 2019

Een comment veld (bij sample info voor specifiek genpanel) met de volgende info

Bij <= 25 genen:

100% coverage for Gen (transcript), Gen(transcript), Gen(transcript), Gen(transcript) …
Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>% 

Bij >25 genen
Optie 1:

100% coverage for <xx> genes. 
Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>% 

Optie 2:

>95% coverage for <xx> genes. 
Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>%, Gen (transcript) = <y>% 

xx = aantal genen met 100% coverage . (of optie 2: 95)
y = percentage coverage; kleiner dan 100% (of optie 2: 95)

Wellicht "samenvatting" als titel van het comment?

@hwmvandeutekom
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hwmvandeutekom commented Nov 7, 2019

Feedback:
over het algemeen zijn de 'custom panels' klein en kunnen dus alle genen uitgeschreven worden.

Extra toevoeging
"overall panel coverage" of iets in het Nederlands? "algehele coverage (15x) van gen panel <GEN> = xxx%"
100% coverage for genes:
alle genen uitgeschreven in alfabetische volgorde
<100% coverage for genes:
alle genen uitgeschreven in alfabetische volgorde

@rernst rernst added the feature label Dec 4, 2019
@hwmvandeutekom
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hwmvandeutekom commented Jan 28, 2020

Besproken bij de staf; tekst wordt als volgt:

Genpanel dekking >15X = <>%.

Genen met volledige dekking: GEN1(NM_xx), GEN2(NM_xx).

Genen met onvolledige dekking: GEN3(NM_xx) = yy%, GEN4(NM_xx) = yy%.

rernst added a commit that referenced this issue May 12, 2020
Panel summary for custom panels, solves #21
@rernst rernst mentioned this issue May 13, 2020
@rernst rernst closed this as completed Jun 15, 2020
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