linker_file_generator.wiki

Check out location

	svn co https://svn.janelia.org/penglab/projects/vaa3d_tools/released_plugins/v3d_plugins/linkerfile_generator

Usage

for all SWC (e.g. neuron) files under a directory
for all APO (point cloud) files under a directory
for all TIF images under a directory
for all LSM images under a directory
for all V3D Raw images under a directory
for all images (.tif, .tiff, .raw) under a directory
for all V3D-recognizable files under a directory

func

linker
help

   Usage : v3d -x linker_file -f linker -i <in_folder> -o <ano_file> -p <method_code> 

     in_folder    choose a directory that contain specified files
     ano_file     specify the ano file name to be created
     method_code  ano options, default 1
                  1 for for all SWC (e.g. neuron) files under a directory
                  2 for for all APO (point cloud) files under a directory
                  3 for all TIF images under a directory
                  4 for all LSM images under a directory
                  5 for all V3D Raw images under a directory
                  6 for all images (*.tif, *.tiff, *.raw) under a directory
                  7 for all V3D-recognizable files under a directory

   e.g. v3d -x linker_file -f linker -i input_folder -o mylinker.ano -p 1