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undefined Relationship JSON failures #374

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Robbie1977 opened this issue Jul 11, 2024 · 3 comments
Closed

undefined Relationship JSON failures #374

Robbie1977 opened this issue Jul 11, 2024 · 3 comments
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Robbie1977 commented Jul 11, 2024 •
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Please give details of the issue:

Issues decoding JSON - needs further investigation

found examples:

FBbt_00003743

Expected a string but was BEGIN_ARRAY at line 1 column 8675

{"term": {"core": {"iri": "http://purl.obolibrary.org/obo/FBbt_00003743", "symbol": "C2", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "GABAergic", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003743", "unique_facets": ["Adult", "GABAergic", "Nervous_system", "Visual_system"], "label": "centrifugal neuron C2"}, "description": ["Adult centrifugal neuron with arborizations in the medulla layers M1, M5/M6, M8 and M10 and more restricted arborizations in the lamina (Fischbach and Dittrich, 1989; Kind et al., 2021). In the medulla, it makes reciprocal connections to lamina monopolar neuron L1, and is presynaptic to L2 and L5, as well as medullary intrinsic neuron Mi1 (Takemura et al., 2013). It is GABAergic (Fei et al., 2010)."], "comment": ["Pre- versus postsynaptic innervation in the proximal medulla was inferred by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Connectivity in the medulla was extrapolated from serial EM of 7 columns from a single sample (Takemura et al., 2013)."]}, "query": "Get JSON for Neuron Class", "version": "e231b06", "parents": [{"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003742", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "Nervous_system", "Neuron", "Visual_system", "has_subClass", "hasScRNAseq"], "short_form": "FBbt_00003742", "unique_facets": ["Adult", "Nervous_system", "Neuron", "Visual_system"], "label": "optic lobe centrifugal columnar neuron"}, {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00058207", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "GABAergic", "Nervous_system", "Neuron", "has_subClass", "hasScRNAseq"], "short_form": "FBbt_00058207", "unique_facets": ["Adult", "GABAergic", "Nervous_system"], "label": "adult GABAergic neuron"}], "relationships": [{"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013008", "database_cross_reference": [], "label": "receives synaptic input from neuron", "type": "receives_synaptic_input_from_neuron", "confidence_value": ""}, "object": {"symbol": "L1", "iri": "http://purl.obolibrary.org/obo/FBbt_00003719", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "Glutamatergic", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003719", "unique_facets": ["Adult", "Glutamatergic", "Nervous_system", "Visual_system"], "label": "lamina monopolar neuron L1"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003758", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003758", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M8"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003754", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003754", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M5"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003750", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003750", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M1"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003760", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003760", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M10"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003708", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_domain", "Visual_system"], "short_form": "FBbt_00003708", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_domain", "Visual_system"], "label": "lamina"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013009", "database_cross_reference": [], "label": "sends synaptic output to cell", "type": "sends_synaptic_output_to_cell", "confidence_value": ""}, "object": {"symbol": "L5", "iri": "http://purl.obolibrary.org/obo/FBbt_00003725", "types": ["Entity", "Adult", "Anatomy", "Cell", "Cholinergic", "Class", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003725", "unique_facets": ["Adult", "Cholinergic", "Nervous_system", "Visual_system"], "label": "lamina monopolar neuron L5"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013009", "database_cross_reference": [], "label": "sends synaptic output to cell", "type": "sends_synaptic_output_to_cell", "confidence_value": ""}, "object": {"symbol": "L1", "iri": "http://purl.obolibrary.org/obo/FBbt_00003719", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "Glutamatergic", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003719", "unique_facets": ["Adult", "Glutamatergic", "Nervous_system", "Visual_system"], "label": "lamina monopolar neuron L1"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013009", "database_cross_reference": [], "label": "sends synaptic output to cell", "type": "sends_synaptic_output_to_cell", "confidence_value": ""}, "object": {"symbol": "Mi1", "iri": "http://purl.obolibrary.org/obo/FBbt_00003776", "types": ["Entity", "Adult", "Anatomy", "Cell", "Cholinergic", "Class", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003776", "unique_facets": ["Adult", "Cholinergic", "Nervous_system", "Visual_system"], "label": "medullary intrinsic neuron Mi1"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013009", "database_cross_reference": [], "label": "sends synaptic output to cell", "type": "sends_synaptic_output_to_cell", "confidence_value": ""}, "object": {"symbol": "L2", "iri": "http://purl.obolibrary.org/obo/FBbt_00003720", "types": ["Entity", "Adult", "Anatomy", "Cell", "Cholinergic", "Class", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003720", "unique_facets": ["Adult", "Cholinergic", "Nervous_system", "Visual_system"], "label": "lamina monopolar neuron L2"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013003", "database_cross_reference": [], "label": "sends synaptic output to region", "type": "sends_synaptic_output_to_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003708", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_domain", "Visual_system"], "short_form": "FBbt_00003708", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_domain", "Visual_system"], "label": "lamina"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013003", "database_cross_reference": [], "label": "sends synaptic output to region", "type": "sends_synaptic_output_to_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003750", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003750", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M1"}}], "related_individuals": [], "xrefs": [{"link_base": "https://flybrain-ndb.virtualflybrain.org/neuronrec-", "site": {"symbol": "", "iri": "http://virtualflybrain.org/reports/FlyBrain_NDB", "types": ["Entity", "Individual", "Site"], "short_form": "FlyBrain_NDB", "unique_facets": ["Site"], "label": "FlyBrain NeuronDB"}, "is_data_source": false, "link_postfix": [".html"], "icon": "http://flybrain-ndb.virtualflybrain.org/NDB_title260.gif", "accession": "10079", "link_text": "centrifugal neuron C2 on FlyBrain NeuronDB", "homepage": "https://flybrain-ndb.virtualflybrain.org"}], "anatomy_channel_image": [{"anatomy": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFB_001029f4", "types": ["Entity", "Adult", "Anatomy", "Cell", "GABAergic", "Individual", "Nervous_system", "Neuron", "Visual_system", "has_image", "has_neuron_connectivity", "FAFB", "NBLAST"], "short_form": "VFB_001029f4", "unique_facets": ["Adult", "GABAergic", "Nervous_system", "Visual_system"], "label": "C2#5 (FAFB:11906497)"}, "channel_image": {"image": {"image_nrrd": "http://www.virtualflybrain.org/data/VFB/i/0010/29f4/VFB_00101567/volume.nrrd", "image_swc": "http://www.virtualflybrain.org/data/VFB/i/0010/29f4/VFB_00101567/volume.swc", "template_channel": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFBc_00101567", "types": ["Entity", "Individual", "Template"], "short_form": "VFBc_00101567", "unique_facets": [], "label": "JRC2018Unisex_c"}, "index": [], "template_anatomy": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFB_00101567", "types": ["Entity", "Adult", "Anatomy", "Individual", "Nervous_system", "Template", "has_image"], "short_form": "VFB_00101567", "unique_facets": ["Adult", "Nervous_system"], "label": "JRC2018Unisex"}, "image_wlz": "http://www.virtualflybrain.org/data/VFB/i/0010/29f4/VFB_00101567/volume.wlz", "image_obj": "http://www.virtualflybrain.org/data/VFB/i/0010/29f4/VFB_00101567/volume.obj", "image_thumbnail": "http://www.virtualflybrain.org/data/VFB/i/0010/29f4/VFB_00101567/thumbnail.png", 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"http://www.virtualflybrain.org/data/VFB/i/0010/29e0/VFB_00101567/volume.nrrd", "image_swc": "http://www.virtualflybrain.org/data/VFB/i/0010/29e0/VFB_00101567/volume.swc", "template_channel": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFBc_00101567", "types": ["Entity", "Individual", "Template"], "short_form": "VFBc_00101567", "unique_facets": [], "label": "JRC2018Unisex_c"}, "index": [], "template_anatomy": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFB_00101567", "types": ["Entity", "Adult", "Anatomy", "Individual", "Nervous_system", "Template", "has_image"], "short_form": "VFB_00101567", "unique_facets": ["Adult", "Nervous_system"], "label": "JRC2018Unisex"}, "image_wlz": "http://www.virtualflybrain.org/data/VFB/i/0010/29e0/VFB_00101567/volume.wlz", "image_obj": "http://www.virtualflybrain.org/data/VFB/i/0010/29e0/VFB_00101567/volume.obj", "image_thumbnail": "http://www.virtualflybrain.org/data/VFB/i/0010/29e0/VFB_00101567/thumbnail.png", 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"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/29d9/VFB_00101567/"}, "channel": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFBc_001029d9", "types": ["Entity", "Individual"], "short_form": "VFBc_001029d9", "unique_facets": [], "label": "C2#3 (FAFB:11456776)_c"}, "imaging_technique": {"symbol": "TEM", "iri": "http://purl.obolibrary.org/obo/FBbi_00000258", "types": ["Entity", "Class", "has_subClass"], "short_form": "FBbi_00000258", "unique_facets": ["Class"], "label": "transmission electron microscopy (TEM)"}}}, {"anatomy": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFB_001029gh", "types": ["Entity", "Adult", "Anatomy", "Cell", "GABAergic", "Individual", "Nervous_system", "Neuron", "Visual_system", "has_image", "has_neuron_connectivity", "FAFB", "NBLAST"], "short_form": "VFB_001029gh", "unique_facets": ["Adult", "GABAergic", "Nervous_system", "Visual_system"], "label": "C2#4 (FAFB:12044212)"}, "channel_image": {"image": {"image_nrrd": 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"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/29gh/VFB_00101567/"}, "channel": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFBc_001029gh", "types": ["Entity", "Individual"], "short_form": "VFBc_001029gh", "unique_facets": [], "label": "C2#4 (FAFB:12044212)_c"}, "imaging_technique": {"symbol": "TEM", "iri": "http://purl.obolibrary.org/obo/FBbi_00000258", "types": ["Entity", "Class", "has_subClass"], "short_form": "FBbi_00000258", "unique_facets": ["Class"], "label": "transmission electron microscopy (TEM)"}}}, {"anatomy": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFB_001029cy", "types": ["Entity", "Adult", "Anatomy", "Cell", "GABAergic", "Individual", "Nervous_system", "Neuron", "Visual_system", "has_image", "has_neuron_connectivity", "FAFB", "NBLAST"], "short_form": "VFB_001029cy", "unique_facets": ["Adult", "GABAergic", "Nervous_system", "Visual_system"], "label": "C2#1 (FAFB:11453787)"}, "channel_image": {"image": {"image_nrrd": "http://www.virtualflybrain.org/data/VFB/i/0010/29cy/VFB_00101567/volume.nrrd", "image_swc": "http://www.virtualflybrain.org/data/VFB/i/0010/29cy/VFB_00101567/volume.swc", "template_channel": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFBc_00101567", "types": ["Entity", "Individual", "Template"], "short_form": "VFBc_00101567", "unique_facets": [], "label": "JRC2018Unisex_c"}, "index": [], "template_anatomy": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFB_00101567", "types": ["Entity", "Adult", "Anatomy", "Individual", "Nervous_system", "Template", "has_image"], "short_form": "VFB_00101567", "unique_facets": ["Adult", "Nervous_system"], "label": "JRC2018Unisex"}, "image_wlz": "http://www.virtualflybrain.org/data/VFB/i/0010/29cy/VFB_00101567/volume.wlz", "image_obj": "http://www.virtualflybrain.org/data/VFB/i/0010/29cy/VFB_00101567/volume.obj", "image_thumbnail": "http://www.virtualflybrain.org/data/VFB/i/0010/29cy/VFB_00101567/thumbnail.png", "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/29cy/VFB_00101567/"}, "channel": {"symbol": "", "iri": "http://virtualflybrain.org/reports/VFBc_001029cy", "types": ["Entity", "Individual"], "short_form": "VFBc_001029cy", "unique_facets": [], "label": "C2#1 (FAFB:11453787)_c"}, "imaging_technique": {"symbol": "TEM", "iri": "http://purl.obolibrary.org/obo/FBbi_00000258", "types": ["Entity", "Class", "has_subClass"], "short_form": "FBbi_00000258", "unique_facets": ["Class"], "label": "transmission electron microscopy (TEM)"}}}], "pub_syn": [{"synonym": {"scope": "has_exact_synonym", "label": "C2", "type": "http://purl.obolibrary.org/obo/fbbt#VFB_SYMBOL"}, "pub": {"core": {"symbol": "", "iri": "http://flybase.org/reports/FBrf0247762", "types": ["Entity", "Individual", "pub"], "short_form": "FBrf0247762", "unique_facets": ["pub"], "label": "\\u00d6zel et al., 2021, Nature 589(7840): 88--95"}, "FlyBase": "FBrf0247762", "PubMed": "33149298", "DOI": 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FBbt_00003744

Expected a string but was BEGIN_ARRAY at line 1 column 9266

{"term": {"core": {"iri": "http://purl.obolibrary.org/obo/FBbt_00003744", "symbol": "C3", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "GABAergic", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003744", "unique_facets": ["Adult", "GABAergic", "Nervous_system", "Visual_system"], "label": "centrifugal neuron C3"}, "description": ["Adult centrifugal neuron with arborizations in medulla layers M1-2, M5, and M9-10 and more restricted arborizations in the lamina (Fischbach and Dittrich, 1989; Kind et al., 2021). It forms presynapses and postsynapses in the lamina (Morante and Desplan, 2008; Rivera-Alba et al., 2011). In the medulla it is strongly presynaptic to monopolar lamina neuron L2 and columnar neuron T1, and strongly postsynaptic to L1 (Takemura et al., 2013). It is GABAergic (Fei et al., 2010)."], "comment": ["Pre-synaptic terminals were assessed by labelling with a UAS-Synaptotagmin reporter (P{UAS-HA-syt} - FBtp0015803). The identification of dendrites was done using a UAS-Dscam (P{UAS-Dscam.exon17.1.GFP} - FBtp0021447) reporter (Morante and Desplan, 2008). Cell connectivity in the lamina was determined by analysis of semi-automated EM reconstruction of 749 serial sections of 21 complete lamina cartridges. Connectivity in the medulla was extrapolated from serial EM of 7 columns from a single sample (Takemura et al., 2013)."]}, "query": "Get JSON for Neuron Class", "version": "e231b06", "parents": [{"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003742", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "Nervous_system", "Neuron", "Visual_system", "has_subClass", "hasScRNAseq"], "short_form": "FBbt_00003742", "unique_facets": ["Adult", "Nervous_system", "Neuron", "Visual_system"], "label": "optic lobe centrifugal columnar neuron"}, {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00058207", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "GABAergic", "Nervous_system", "Neuron", "has_subClass", "hasScRNAseq"], "short_form": "FBbt_00058207", "unique_facets": ["Adult", "GABAergic", "Nervous_system"], "label": "adult GABAergic neuron"}, {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00110137", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "Nervous_system", "Neuron", "has_subClass", "hasScRNAseq"], "short_form": "FBbt_00110137", "unique_facets": ["Adult", "Nervous_system", "Neuron"], "label": "optic lobe wide-field columnar neuron"}], "relationships": [{"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013008", "database_cross_reference": [], "label": "receives synaptic input from neuron", "type": "receives_synaptic_input_from_neuron", "confidence_value": ""}, "object": {"symbol": "L1", "iri": "http://purl.obolibrary.org/obo/FBbt_00003719", "types": ["Entity", "Adult", "Anatomy", "Cell", "Class", "Glutamatergic", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003719", "unique_facets": ["Adult", "Glutamatergic", "Nervous_system", "Visual_system"], "label": "lamina monopolar neuron L1"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003751", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003751", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M2"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003759", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003759", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M9"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003754", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003754", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M5"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003750", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003750", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M1"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003760", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_subdomain", "Visual_system"], "short_form": "FBbt_00003760", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_subdomain", "Visual_system"], "label": "medulla layer M10"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013002", "database_cross_reference": [], "label": "receives synaptic input in region", "type": "receives_synaptic_input_in_region", "confidence_value": ""}, "object": {"symbol": "", "iri": "http://purl.obolibrary.org/obo/FBbt_00003708", "types": ["Entity", "Adult", "Anatomy", "Class", "Nervous_system", "Synaptic_neuropil", "Synaptic_neuropil_domain", "Visual_system"], "short_form": "FBbt_00003708", "unique_facets": ["Adult", "Nervous_system", "Synaptic_neuropil_domain", "Visual_system"], "label": "lamina"}}, {"relation": {"iri": "http://purl.obolibrary.org/obo/RO_0013009", "database_cross_reference": [], "label": "sends synaptic output to cell", "type": "sends_synaptic_output_to_cell", "confidence_value": ""}, "object": {"symbol": "L2", "iri": "http://purl.obolibrary.org/obo/FBbt_00003720", "types": ["Entity", "Adult", "Anatomy", "Cell", "Cholinergic", "Class", "Nervous_system", "Neuron", "Visual_system", "hasScRNAseq"], "short_form": "FBbt_00003720", "unique_facets": ["Adult", "Cholinergic", "Nervous_system", "Visual_system"], "label": "lamina monopolar neuron L2"}}, {"relation": {"iri": 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Support info:
Thu Jul 11 2024 12:03:06 GMT+0100 (British Summer Time)
Chrome
126.0.0.0 [1920,1113]
https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=FBbt_00003743&i=VFB_00101567,VFB_001029e0
@Robbie1977 Robbie1977 self-assigned this Jul 11, 2024
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T4a

Error parsing JSON element:

{"term":{"core":{"iri":"http://purl.obolibrary.org/obo/FBbt_00003732","symbol":"T4a","types":["Entity","Adult","Anatomy","Cell","Cholinergic","Class","Nervous_system","Neuron","Visual_system","has_subClass"],"short_form":"FBbt_00003732","unique_facets":["Adult","Cholinergic","Nervous_system","Visual_system"],"label":"T4a neuron"},"description":["T4 neuron with its lobula plate arbor in layer 1 (Fischbach and Dittrich, 1989). It responds to motion in a diagonal front-to-back direction (Henning et al., 2022)."],"comment":[]},"query":"Get JSON for Neuron Class","version":"e231b06","parents":[{"symbol":"T4","iri":"http://purl.obolibrary.org/obo/FBbt_00003731","types":["Entity","Adult","Anatomy","Cell","Cholinergic","Class","Nervous_system","Neuron","Visual_system","has_subClass"],"short_form":"FBbt_00003731","unique_facets":["Adult","Cholinergic","Nervous_system","Visual_system"],"label":"T4 neuron"}],"relationships":[{"relation":{"iri":"http://purl.obolibrary.org/obo/RO_0013003","database_cross_reference":[],"label":"sends synaptic output to region","type":"sends_synaptic_output_to_region","confidence_value":""},"object":{"symbol":"","iri":"http://purl.obolibrary.org/obo/FBbt_00003886","types":["Entity","Adult","Anatomy","Class","Nervous_system","Synaptic_neuropil","Synaptic_neuropil_subdomain","Visual_system"],"short_form":"FBbt_00003886","unique_facets":["Adult","Nervous_system","Synaptic_neuropil_subdomain","Visual_system"],"label":"lobula plate layer 1"}},{"relation":{"iri":"http://purl.obolibrary.org/obo/RO_0013001","database_cross_reference":[],"label":"has synaptic IO in region","type":"has_synaptic_IO_in_region","confidence_value":""},"object":{"symbol":"","iri":"http://purl.obolibrary.org/obo/FBbt_00003886","types":["Entity","Adult","Anatomy","Class","Nervous_system","Synaptic_neuropil","Synaptic_neuropil_subdomain","Visual_system"],"short_form":"FBbt_00003886","unique_facets":["Adult","Nervous_system","Synaptic_neuropil_subdomain","Visual_system"],"label":"lobula plate layer 1"}},{"relation":{"iri":"http://purl.obolibrary.org/obo/RO_0002202","database_cross_reference":[],"label":"develops from","type":"develops_from","confidence_value":""},"object":{"symbol":"","iri":"http://purl.obolibrary.org/obo/FBbt_00052263","types":["Entity","Anatomy","Cell","Class","Nervous_system","Neuron"],"short_form":"FBbt_00052263","unique_facets":["Nervous_system","Neuron"],"label":"immature T4a neuron"}}],"related_individuals":[],"xrefs":[{"link_base":"https://flybrain-ndb.virtualflybrain.org/neuronrec-","site":{"symbol":"","iri":"http://virtualflybrain.org/reports/FlyBrain_NDB","types":["Entity","Individual","Site"],"short_form":"FlyBrain_NDB","unique_facets":["Site"],"label":"FlyBrain NeuronDB"},"is_data_source":false,"link_postfix":[".html"],"icon":"http://flybrain-ndb.virtualflybrain.org/NDB_title260.gif","accession":"10118","link_text":"T4a neuron on FlyBrain NeuronDB","homepage":"https://flybrain-ndb.virtualflybrain.org"}],"anatomy_channel_image":[],"pub_syn":[{"synonym":{"scope":"has_exact_synonym","label":"T4a","type":"http://purl.obolibrary.org/obo/fbbt#VFB_SYMBOL"},"pub":{"core":{"symbol":"","iri":"http://flybase.org/reports/FBrf0247762","types":["Entity","Individual","pub"],"short_form":"FBrf0247762","unique_facets":["pub"],"label":"Özel et al., 2021, Nature 589(7840): 88--95"},"FlyBase":"FBrf0247762","PubMed":"33149298","DOI":"10.1038/s41586-020-2879-3"}},{"synonym":{"scope":"has_exact_synonym","label":"T neuron T4a","type":""},"pub":{"core":{"symbol":"","iri":"http://flybase.org/reports/Unattributed","types":["Entity","Individual","pub"],"short_form":"Unattributed","unique_facets":["pub"],"label":""},"FlyBase":"","PubMed":"","DOI":""}}],"def_pubs":[{"core":{"symbol":"","iri":"http://flybase.org/reports/FBrf0049410","types":["Entity","Individual","pub"],"short_form":"FBrf0049410","unique_facets":["pub"],"label":"Fischbach and Dittrich, 1989, Cell Tissue Res. 258(3): 441--475"},"FlyBase":"FBrf0049410","PubMed":"","DOI":"10.1007/BF00218858"},{"core":{"symbol":"","iri":"http://flybase.org/reports/FBrf0252436","types":["Entity","Individual","pub"],"short_form":"FBrf0252436","unique_facets":["pub"],"label":"Henning et al., 2022, Sci. Adv. 8(3): eabi7112"},"FlyBase":"FBrf0252436","PubMed":"35044821","DOI":"10.1126/sciadv.abi7112"}],"targeting_splits":[{"iri":"http://virtualflybrain.org/reports/VFBexp_FBtp0121686FBtp0118626","symbol":"","types":["Entity","Class","Expression_pattern","Split"],"short_form":"VFBexp_FBtp0121686FBtp0118626","unique_facets":["Expression_pattern","Split"],"label":"P{R39H12-GAL4.DBD} ∩ P{R35A10-p65.AD} expression pattern"},{"iri":"http://virtualflybrain.org/reports/VFBexp_FBtp0121686FBtp0118626","symbol":"","types":["Entity","Class","Expression_pattern","Split"],"short_form":"VFBexp_FBtp0121686FBtp0118626","unique_facets":["Expression_pattern","Split"],"label":"P{R39H12-GAL4.DBD} ∩ P{R35A10-p65.AD} expression pattern"}]}

| Error: java.lang.IllegalStateException: Expected STRING but was BEGIN_ARRAY

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FBbt_00067054

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This was an issue with xrefs having link_postfix in a list rather than the string extracted at the query level. Fix deployed

Robbie1977 referenced this issue in VirtualFlyBrain/VFB_json_schema Jul 14, 2024
@Robbie1977
fix for link_postfix as a list
c58c844
Robbie1977 added a commit to VirtualFlyBrain/geppetto-vfb that referenced this issue Jul 14, 2024
@Robbie1977
latest queries from https://github.com/VirtualFlyBrain/VFB_json_schem…
e232b55 
…a/actions/runs/9928006125/job/27423700365

Resolves VirtualFlyBrain/VFB2#374
Robbie1977 added a commit to VirtualFlyBrain/VFB_connect that referenced this issue Jul 14, 2024
@Robbie1977
latest queries from https://github.com/VirtualFlyBrain/VFB_json_schem…
efd8ca4 
…a/actions/runs/9928006125/job/27423700365

Resolves VirtualFlyBrain/VFB2#374
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