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Circuit Browser graph layout issues #1179
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KCab-p_R (FlyEM-HB:1108545472) (VFB_jrchjvri) -> aSP-g1_R (FlyEM-HB:949534412) (VFB_jrchk82q). 2 paths. Min weight 10 WITH "VFB_jrchjvri" as a, "VFB_jrchk82q" AS b
MATCH (source:Neuron:has_neuron_connectivity {short_form: a}), (target:Neuron:has_neuron_connectivity {short_form: b})
CALL gds.beta.shortestPath.yens.stream({
nodeQuery: 'MATCH (n:Neuron:has_neuron_connectivity) RETURN id(n) AS id',
relationshipQuery: 'MATCH (a:Neuron:has_neuron_connectivity)-[r:synapsed_to]->(b:Neuron:has_neuron_connectivity) WHERE exists(r.weight) AND r.weight[0] >= 10 RETURN id(a) AS source, id(b) AS target, type(r) as type, 5000-r.weight[0] as weight_p',
sourceNode: id(source),
targetNode: id(target),
k: 2,
relationshipWeightProperty: 'weight_p', relationshipTypes: ['*'], path: true}) YIELD index, sourceNode, targetNode, nodeIds, path WITH * ORDER BY index DESC RETURN * |
Query results from v2-dev: {
"results":[
{
"columns":[
"root",
"pp",
"p",
"fr",
"source",
"target",
"maxHops",
"relationshipY"
],
"data":[
{
"row":[
"VFB_jrchjvri",
[
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjvri",
"curie":"VFB:jrchjvri",
"short_form":"VFB_jrchjvri",
"label_rdfs":[
"KCab-p_R (FlyEM-HB:1108545472)"
],
"sl":"KCab4p_R_4FlyEM4HB511085454724",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"KCab4p_R_4FlyEM4HB511085454724",
"label":"KCab-p_R (FlyEM-HB:1108545472)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
64
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjrhd",
"curie":"VFB:jrchjrhd",
"short_form":"VFB_jrchjrhd",
"label_rdfs":[
"APL_R (FlyEM-HB:425790257)"
],
"sl":"APL_R_4FlyEM4HB54257902574",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"APL_R_4FlyEM4HB54257902574",
"label":"APL_R (FlyEM-HB:425790257)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjrhd",
"curie":"VFB:jrchjrhd",
"short_form":"VFB_jrchjrhd",
"label_rdfs":[
"APL_R (FlyEM-HB:425790257)"
],
"sl":"APL_R_4FlyEM4HB54257902574",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"APL_R_4FlyEM4HB54257902574",
"label":"APL_R (FlyEM-HB:425790257)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
20
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0f8",
"curie":"VFB:jrchk0f8",
"short_form":"VFB_jrchk0f8",
"label_rdfs":[
"MBON20(y1y2)_R (FlyEM-HB:792368888)"
],
"sl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"comment":[
"tracing status-Traced, cropped-False"
],
"qsl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"label":"MBON20(y1y2)_R (FlyEM-HB:792368888)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0f8",
"curie":"VFB:jrchk0f8",
"short_form":"VFB_jrchk0f8",
"label_rdfs":[
"MBON20(y1y2)_R (FlyEM-HB:792368888)"
],
"sl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"comment":[
"tracing status-Traced, cropped-False"
],
"qsl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"label":"MBON20(y1y2)_R (FlyEM-HB:792368888)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
34
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk5pt",
"curie":"VFB:jrchk5pt",
"short_form":"VFB_jrchk5pt",
"label_rdfs":[
"SLP234_R (FlyEM-HB:424379864)"
],
"sl":"SLP234_R_4FlyEM4HB54243798644",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"SLP234_R_4FlyEM4HB54243798644",
"label":"SLP234_R (FlyEM-HB:424379864)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk5pt",
"curie":"VFB:jrchk5pt",
"short_form":"VFB_jrchk5pt",
"label_rdfs":[
"SLP234_R (FlyEM-HB:424379864)"
],
"sl":"SLP234_R_4FlyEM4HB54243798644",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"SLP234_R_4FlyEM4HB54243798644",
"label":"SLP234_R (FlyEM-HB:424379864)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
12
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk82q",
"curie":"VFB:jrchk82q",
"short_form":"VFB_jrchk82q",
"label_rdfs":[
"aSP-g1_R (FlyEM-HB:949534412)"
],
"sl":"aSP4g1_R_4FlyEM4HB59495344124",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"aSP4g1_R_4FlyEM4HB59495344124",
"label":"aSP-g1_R (FlyEM-HB:949534412)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjvri",
"curie":"VFB:jrchjvri",
"short_form":"VFB_jrchjvri",
"label_rdfs":[
"KCab-p_R (FlyEM-HB:1108545472)"
],
"sl":"KCab4p_R_4FlyEM4HB511085454724",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"KCab4p_R_4FlyEM4HB511085454724",
"label":"KCab-p_R (FlyEM-HB:1108545472)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
33
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0ed",
"curie":"VFB:jrchk0ed",
"short_form":"VFB_jrchk0ed",
"label_rdfs":[
"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)"
],
"sl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"label":"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)",
"qsl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0ed",
"curie":"VFB:jrchk0ed",
"short_form":"VFB_jrchk0ed",
"label_rdfs":[
"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)"
],
"sl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"label":"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)",
"qsl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
71
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjz4w",
"curie":"VFB:jrchjz4w",
"short_form":"VFB_jrchjz4w",
"label_rdfs":[
"LHCENT6_R (FlyEM-HB:5813068669)"
],
"sl":"LHCENT6_R_4FlyEM4HB558130686694",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"LHCENT6_R_4FlyEM4HB558130686694",
"label":"LHCENT6_R (FlyEM-HB:5813068669)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjz4w",
"curie":"VFB:jrchjz4w",
"short_form":"VFB_jrchjz4w",
"label_rdfs":[
"LHCENT6_R (FlyEM-HB:5813068669)"
],
"sl":"LHCENT6_R_4FlyEM4HB558130686694",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"LHCENT6_R_4FlyEM4HB558130686694",
"label":"LHCENT6_R (FlyEM-HB:5813068669)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
19
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk5pt",
"curie":"VFB:jrchk5pt",
"short_form":"VFB_jrchk5pt",
"label_rdfs":[
"SLP234_R (FlyEM-HB:424379864)"
],
"sl":"SLP234_R_4FlyEM4HB54243798644",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"SLP234_R_4FlyEM4HB54243798644",
"label":"SLP234_R (FlyEM-HB:424379864)"
}
]
],
[
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjvri",
"curie":"VFB:jrchjvri",
"short_form":"VFB_jrchjvri",
"label_rdfs":[
"KCab-p_R (FlyEM-HB:1108545472)"
],
"sl":"KCab4p_R_4FlyEM4HB511085454724",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"KCab4p_R_4FlyEM4HB511085454724",
"label":"KCab-p_R (FlyEM-HB:1108545472)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
64
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjrhd",
"curie":"VFB:jrchjrhd",
"short_form":"VFB_jrchjrhd",
"label_rdfs":[
"APL_R (FlyEM-HB:425790257)"
],
"sl":"APL_R_4FlyEM4HB54257902574",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"APL_R_4FlyEM4HB54257902574",
"label":"APL_R (FlyEM-HB:425790257)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjvri",
"curie":"VFB:jrchjvri",
"short_form":"VFB_jrchjvri",
"label_rdfs":[
"KCab-p_R (FlyEM-HB:1108545472)"
],
"sl":"KCab4p_R_4FlyEM4HB511085454724",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"KCab4p_R_4FlyEM4HB511085454724",
"label":"KCab-p_R (FlyEM-HB:1108545472)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
35
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjrhd",
"curie":"VFB:jrchjrhd",
"short_form":"VFB_jrchjrhd",
"label_rdfs":[
"APL_R (FlyEM-HB:425790257)"
],
"sl":"APL_R_4FlyEM4HB54257902574",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"APL_R_4FlyEM4HB54257902574",
"label":"APL_R (FlyEM-HB:425790257)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjrhd",
"curie":"VFB:jrchjrhd",
"short_form":"VFB_jrchjrhd",
"label_rdfs":[
"APL_R (FlyEM-HB:425790257)"
],
"sl":"APL_R_4FlyEM4HB54257902574",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"APL_R_4FlyEM4HB54257902574",
"label":"APL_R (FlyEM-HB:425790257)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
20
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0f8",
"curie":"VFB:jrchk0f8",
"short_form":"VFB_jrchk0f8",
"label_rdfs":[
"MBON20(y1y2)_R (FlyEM-HB:792368888)"
],
"sl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"comment":[
"tracing status-Traced, cropped-False"
],
"qsl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"label":"MBON20(y1y2)_R (FlyEM-HB:792368888)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjrhd",
"curie":"VFB:jrchjrhd",
"short_form":"VFB_jrchjrhd",
"label_rdfs":[
"APL_R (FlyEM-HB:425790257)"
],
"sl":"APL_R_4FlyEM4HB54257902574",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"APL_R_4FlyEM4HB54257902574",
"label":"APL_R (FlyEM-HB:425790257)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
35
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0f8",
"curie":"VFB:jrchk0f8",
"short_form":"VFB_jrchk0f8",
"label_rdfs":[
"MBON20(y1y2)_R (FlyEM-HB:792368888)"
],
"sl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"comment":[
"tracing status-Traced, cropped-False"
],
"qsl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"label":"MBON20(y1y2)_R (FlyEM-HB:792368888)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0f8",
"curie":"VFB:jrchk0f8",
"short_form":"VFB_jrchk0f8",
"label_rdfs":[
"MBON20(y1y2)_R (FlyEM-HB:792368888)"
],
"sl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"comment":[
"tracing status-Traced, cropped-False"
],
"qsl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"label":"MBON20(y1y2)_R (FlyEM-HB:792368888)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
34
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk5pt",
"curie":"VFB:jrchk5pt",
"short_form":"VFB_jrchk5pt",
"label_rdfs":[
"SLP234_R (FlyEM-HB:424379864)"
],
"sl":"SLP234_R_4FlyEM4HB54243798644",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"SLP234_R_4FlyEM4HB54243798644",
"label":"SLP234_R (FlyEM-HB:424379864)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0f8",
"curie":"VFB:jrchk0f8",
"short_form":"VFB_jrchk0f8",
"label_rdfs":[
"MBON20(y1y2)_R (FlyEM-HB:792368888)"
],
"sl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"comment":[
"tracing status-Traced, cropped-False"
],
"qsl":"MBON204y1y24_R_4FlyEM4HB57923688884",
"label":"MBON20(y1y2)_R (FlyEM-HB:792368888)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
10
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk5pt",
"curie":"VFB:jrchk5pt",
"short_form":"VFB_jrchk5pt",
"label_rdfs":[
"SLP234_R (FlyEM-HB:424379864)"
],
"sl":"SLP234_R_4FlyEM4HB54243798644",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"SLP234_R_4FlyEM4HB54243798644",
"label":"SLP234_R (FlyEM-HB:424379864)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk5pt",
"curie":"VFB:jrchk5pt",
"short_form":"VFB_jrchk5pt",
"label_rdfs":[
"SLP234_R (FlyEM-HB:424379864)"
],
"sl":"SLP234_R_4FlyEM4HB54243798644",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"SLP234_R_4FlyEM4HB54243798644",
"label":"SLP234_R (FlyEM-HB:424379864)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
12
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk82q",
"curie":"VFB:jrchk82q",
"short_form":"VFB_jrchk82q",
"label_rdfs":[
"aSP-g1_R (FlyEM-HB:949534412)"
],
"sl":"aSP4g1_R_4FlyEM4HB59495344124",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"aSP4g1_R_4FlyEM4HB59495344124",
"label":"aSP-g1_R (FlyEM-HB:949534412)"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjvri",
"curie":"VFB:jrchjvri",
"short_form":"VFB_jrchjvri",
"label_rdfs":[
"KCab-p_R (FlyEM-HB:1108545472)"
],
"sl":"KCab4p_R_4FlyEM4HB511085454724",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"KCab4p_R_4FlyEM4HB511085454724",
"label":"KCab-p_R (FlyEM-HB:1108545472)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
33
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0ed",
"curie":"VFB:jrchk0ed",
"short_form":"VFB_jrchk0ed",
"label_rdfs":[
"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)"
],
"sl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"label":"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)",
"qsl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchjvri",
"curie":"VFB:jrchjvri",
"short_form":"VFB_jrchjvri",
"label_rdfs":[
"KCab-p_R (FlyEM-HB:1108545472)"
],
"sl":"KCab4p_R_4FlyEM4HB511085454724",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"qsl":"KCab4p_R_4FlyEM4HB511085454724",
"label":"KCab-p_R (FlyEM-HB:1108545472)"
},
{
"iri":"http://purl.obolibrary.org/obo/RO_0002120",
"short_form":"RO_0002120",
"weight":[
4
],
"label":"synapsed to",
"type":"Related"
},
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0ed",
"curie":"VFB:jrchk0ed",
"short_form":"VFB_jrchk0ed",
"label_rdfs":[
"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)"
],
"sl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"label":"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)",
"qsl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344"
}
],
[
{
"iri":"http://virtualflybrain.org/reports/VFB_jrchk0ed",
"curie":"VFB:jrchk0ed",
"short_form":"VFB_jrchk0ed",
"label_rdfs":[
"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)"
],
"sl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344",
"comment":[
"tracing status-Roughly traced, cropped-False"
],
"label":"MBON06(B1>a)(AVM07)_L (FlyEM-HB:422725634)",
"qsl":"MBON064B16a44AVM074_L_4FlyEM4HB54227256344"
},
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} |
UI issues:
|
jrmartin
added a commit
that referenced
this issue
Sep 15, 2021
autocomplete results for circuit browser
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We have a few examples where the current process is causing the graph to be overly complex
The text was updated successfully, but these errors were encountered: