sync: pipeline2 with pipeline2-sync-6e9f

model/vfb.xmi

@@ -557,7 +557,7 @@
           name="Get JSON for Individual"
           description="Get JSON for Individual:Anatomy"
           runForCount="false"
-          query=""statement": "MATCH (primary:Individual:Anatomy) WHERE primary.short_form in [{ID}] WITH primary OPTIONAL MATCH (primary)-[:has_source]-(ds:DataSet)-[:has_license]->(l:License) WITH COLLECT ({ dataset: { link : coalesce(ds.dataset_link[0], ''), core : { short_form: ds.short_form, label: coalesce(ds.label,''), iri: ds.iri, types: labels(ds), symbol: coalesce(ds.symbol[0], '')} }, license: { icon : coalesce(l.license_logo[0], ''), link : coalesce(l.license_url[0], ''), core : { short_form: l.short_form, label: coalesce(l.label,''), iri: l.iri, types: labels(l), symbol: coalesce(l.symbol[0], '')} }}) AS dataset_license,primary OPTIONAL MATCH (o:Class)<-[r:SUBCLASSOF|INSTANCEOF]-(primary) WITH CASE WHEN o IS NULL THEN [] ELSE COLLECT ({ short_form: o.short_form, label: coalesce(o.label,''), iri: o.iri, types: labels(o), symbol: coalesce(o.symbol[0], '')} ) END AS parents ,primary,dataset_license OPTIONAL MATCH (o:Class)<-[r {type:'Related'}]-(primary) WITH CASE WHEN o IS NULL THEN [] ELSE COLLECT ({ relation: { label: r.label, iri: r.iri, type: type(r) } , object: { short_form: o.short_form, label: coalesce(o.label,''), iri: o.iri, types: labels(o), symbol: coalesce(o.symbol[0], '')} }) END AS relationships ,primary,dataset_license,parents OPTIONAL MATCH (s:Site { short_form: apoc.convert.toList(primary.self_xref)[0]}) WITH CASE WHEN s IS NULL THEN [] ELSE COLLECT({ link_base: coalesce(s.link_base[0], ''), accession: coalesce(primary.short_form, ''), link_text: primary.label + ' on ' + s.label, homepage: coalesce(s.homepage[0], ''), site: { short_form: s.short_form, label: coalesce(s.label,''), iri: s.iri, types: labels(s), symbol: coalesce(s.symbol[0], '')} , icon: coalesce(s.link_icon_url[0], ''), link_postfix: coalesce(s.link_postfix[0], '')}) END AS self_xref, primary, dataset_license, parents, relationships OPTIONAL MATCH (s:Site)<-[dbx:database_cross_reference]-(primary) WITH CASE WHEN s IS NULL THEN self_xref ELSE COLLECT({ link_base: coalesce(s.link_base[0], ''), accession: coalesce(dbx.accession[0], ''), link_text: primary.label + ' on ' + s.label, homepage: coalesce(s.homepage[0], ''), site: { short_form: s.short_form, label: coalesce(s.label,''), iri: s.iri, types: labels(s), symbol: coalesce(s.symbol[0], '')} , icon: coalesce(s.link_icon_url[0], ''), link_postfix: coalesce(s.link_postfix[0], '')}) + self_xref END AS xrefs,primary,dataset_license,parents,relationships OPTIONAL MATCH (primary)<-[:depicts]-(channel:Individual)-[irw:in_register_with]->(template:Individual)-[:depicts]->(template_anat:Individual) WITH template, channel, template_anat, irw, primary, dataset_license, parents, relationships, xrefs OPTIONAL MATCH (channel)-[:is_specified_output_of]->(technique:Class) WITH CASE WHEN channel IS NULL THEN [] ELSE collect ({ channel: { short_form: channel.short_form, label: coalesce(channel.label,''), iri: channel.iri, types: labels(channel), symbol: coalesce(channel.symbol[0], '')} , imaging_technique: { short_form: technique.short_form, label: coalesce(technique.label,''), iri: technique.iri, types: labels(technique), symbol: coalesce(technique.symbol[0], '')} ,image: { template_channel : { short_form: template.short_form, label: coalesce(template.label,''), iri: template.iri, types: labels(template), symbol: coalesce(template.symbol[0], '')} , template_anatomy: { short_form: template_anat.short_form, label: coalesce(template_anat.label,''), iri: template_anat.iri, types: labels(template_anat), symbol: coalesce(template_anat.symbol[0], '')} ,image_folder: COALESCE(irw.folder[0], ''), index: coalesce(apoc.convert.toInteger(irw.index[0]), []) + [] }}) END AS channel_image,primary,dataset_license,parents,relationships,xrefs RETURN { core : { short_form: primary.short_form, label: coalesce(primary.label,''), iri: primary.iri, types: labels(primary), symbol: coalesce(primary.symbol[0], '')} , description : coalesce(primary.description, []), comment : coalesce(primary.comment, []) } AS term, 'Get JSON for Individual:Anatomy' AS query, '4025897' AS version , dataset_license, parents, relationships, xrefs, channel_image", "parameters" : { "ID" : "$ID" }"
+          query=""statement": "MATCH (primary:Individual) WHERE primary.short_form in [{ID}] WITH primary OPTIONAL MATCH (primary)-[:has_source]-(ds:DataSet)-[:has_license]->(l:License) WITH COLLECT ({ dataset: { link : coalesce(ds.dataset_link[0], ''), core : { short_form: ds.short_form, label: coalesce(ds.label,''), iri: ds.iri, types: labels(ds), symbol: coalesce(ds.symbol[0], '')} }, license: { icon : coalesce(l.license_logo[0], ''), link : coalesce(l.license_url[0], ''), core : { short_form: l.short_form, label: coalesce(l.label,''), iri: l.iri, types: labels(l), symbol: coalesce(l.symbol[0], '')} }}) AS dataset_license,primary OPTIONAL MATCH (o:Class)<-[r:SUBCLASSOF|INSTANCEOF]-(primary) WITH CASE WHEN o IS NULL THEN [] ELSE COLLECT ({ short_form: o.short_form, label: coalesce(o.label,''), iri: o.iri, types: labels(o), symbol: coalesce(o.symbol[0], '')} ) END AS parents ,primary,dataset_license OPTIONAL MATCH (o:Class)<-[r {type:'Related'}]-(primary) WITH CASE WHEN o IS NULL THEN [] ELSE COLLECT ({ relation: { label: r.label, iri: r.iri, type: type(r) } , object: { short_form: o.short_form, label: coalesce(o.label,''), iri: o.iri, types: labels(o), symbol: coalesce(o.symbol[0], '')} }) END AS relationships ,primary,dataset_license,parents OPTIONAL MATCH (s:Site { short_form: apoc.convert.toList(primary.self_xref)[0]}) WITH CASE WHEN s IS NULL THEN [] ELSE COLLECT({ link_base: coalesce(s.link_base[0], ''), accession: coalesce(primary.short_form, ''), link_text: primary.label + ' on ' + s.label, homepage: coalesce(s.homepage[0], ''), site: { short_form: s.short_form, label: coalesce(s.label,''), iri: s.iri, types: labels(s), symbol: coalesce(s.symbol[0], '')} , icon: coalesce(s.link_icon_url[0], ''), link_postfix: coalesce(s.link_postfix[0], '')}) END AS self_xref, primary, dataset_license, parents, relationships OPTIONAL MATCH (s:Site)<-[dbx:database_cross_reference]-(primary) WITH CASE WHEN s IS NULL THEN self_xref ELSE COLLECT({ link_base: coalesce(s.link_base[0], ''), accession: coalesce(dbx.accession[0], ''), link_text: primary.label + ' on ' + s.label, homepage: coalesce(s.homepage[0], ''), site: { short_form: s.short_form, label: coalesce(s.label,''), iri: s.iri, types: labels(s), symbol: coalesce(s.symbol[0], '')} , icon: coalesce(s.link_icon_url[0], ''), link_postfix: coalesce(s.link_postfix[0], '')}) + self_xref END AS xrefs,primary,dataset_license,parents,relationships OPTIONAL MATCH (primary)<-[:depicts]-(channel:Individual)-[irw:in_register_with]->(template:Individual)-[:depicts]->(template_anat:Individual) WITH template, channel, template_anat, irw, primary, dataset_license, parents, relationships, xrefs OPTIONAL MATCH (channel)-[:is_specified_output_of]->(technique:Class) WITH CASE WHEN channel IS NULL THEN [] ELSE collect ({ channel: { short_form: channel.short_form, label: coalesce(channel.label,''), iri: channel.iri, types: labels(channel), symbol: coalesce(channel.symbol[0], '')} , imaging_technique: { short_form: technique.short_form, label: coalesce(technique.label,''), iri: technique.iri, types: labels(technique), symbol: coalesce(technique.symbol[0], '')} ,image: { template_channel : { short_form: template.short_form, label: coalesce(template.label,''), iri: template.iri, types: labels(template), symbol: coalesce(template.symbol[0], '')} , template_anatomy: { short_form: template_anat.short_form, label: coalesce(template_anat.label,''), iri: template_anat.iri, types: labels(template_anat), symbol: coalesce(template_anat.symbol[0], '')} ,image_folder: COALESCE(irw.folder[0], ''), index: coalesce(apoc.convert.toInteger(irw.index[0]), []) + [] }}) END AS channel_image,primary,dataset_license,parents,relationships,xrefs RETURN { core : { short_form: primary.short_form, label: coalesce(primary.label,''), iri: primary.iri, types: labels(primary), symbol: coalesce(primary.symbol[0], '')} , description : coalesce(primary.description, []), comment : coalesce(primary.comment, []) } AS term, 'Get JSON for Individual:Anatomy' AS query, '4025897' AS version , dataset_license, parents, relationships, xrefs, channel_image", "parameters" : { "ID" : "$ID" }"
           countQuery=""statement": "MATCH (primary:Individual {short_form: {ID}} ) RETURN count(primary) as count", "parameters" : { "ID" : "$ID" }">
         <matchingCriteria
             type="//@libraries.3/@types.0"/>