Automated Docs Update

docs/README.html

@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>AIMSim README &mdash; AIMSim 1.0.1 documentation</title>
+  <title>AIMSim README &mdash; AIMSim 1.0.2 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -116,14 +116,14 @@ <h2>Purpose<a class="headerlink" href="#purpose" title="Permalink to this headli
 <section id="installing-aimsim">
 <h2>Installing AIMSim<a class="headerlink" href="#installing-aimsim" title="Permalink to this headline"></a></h2>
 <p><code class="docutils literal notranslate"><span class="pre">AIMSim</span></code> can be installed with a single command:
-<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">AIMSim</span></code></p>
+<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">aimsim</span></code></p>
 </section>
 <section id="running-aimsim">
 <h2>Running AIMSim<a class="headerlink" href="#running-aimsim" title="Permalink to this headline"></a></h2>
 <p>Start <code class="docutils literal notranslate"><span class="pre">AIMSim</span></code> with a graphical user interface:</p>
-<p><code class="docutils literal notranslate"><span class="pre">AIMSim</span></code></p>
+<p><code class="docutils literal notranslate"><span class="pre">aimsim</span></code></p>
 <p>Start <code class="docutils literal notranslate"><span class="pre">AIMSim</span></code> with a prepared configuration YAML file (<code class="docutils literal notranslate"><span class="pre">config.yaml</span></code>):</p>
-<p><code class="docutils literal notranslate"><span class="pre">AIMSim</span> <span class="pre">config.yaml</span></code></p>
+<p><code class="docutils literal notranslate"><span class="pre">aimsim</span> <span class="pre">config.yaml</span></code></p>
 <section id="currently-implemented-fingerprints">
 <h3>Currently Implemented Fingerprints<a class="headerlink" href="#currently-implemented-fingerprints" title="Permalink to this headline"></a></h3>
 <ol class="arabic simple">

docs/README.rst

@@ -55,18 +55,18 @@ Installing AIMSim
 -----------------
 
 ``AIMSim`` can be installed with a single command:
-``pip install AIMSim``
+``pip install aimsim``
 
 Running AIMSim
 --------------
 
 Start ``AIMSim`` with a graphical user interface:
 
-``AIMSim``
+``aimsim``
 
 Start ``AIMSim`` with a prepared configuration YAML file (\ ``config.yaml``\ ):
 
-``AIMSim config.yaml``
+``aimsim config.yaml``
 
 Currently Implemented Fingerprints
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

docs/_build/html/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: a4e6bfb5e07448c9d04f8617733b0af8
+config: 6deb4687e754927e5d21283ed34479a1
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/_build/html/README.html

@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>AIMSim README &mdash; AIMSim 1.0.1 documentation</title>
+  <title>AIMSim README &mdash; AIMSim 1.0.2 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -116,14 +116,14 @@ <h2>Purpose<a class="headerlink" href="#purpose" title="Permalink to this headli
 <section id="installing-aimsim">
 <h2>Installing AIMSim<a class="headerlink" href="#installing-aimsim" title="Permalink to this headline"></a></h2>
 <p><code class="docutils literal notranslate"><span class="pre">AIMSim</span></code> can be installed with a single command:
-<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">AIMSim</span></code></p>
+<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">aimsim</span></code></p>
 </section>
 <section id="running-aimsim">
 <h2>Running AIMSim<a class="headerlink" href="#running-aimsim" title="Permalink to this headline"></a></h2>
 <p>Start <code class="docutils literal notranslate"><span class="pre">AIMSim</span></code> with a graphical user interface:</p>
-<p><code class="docutils literal notranslate"><span class="pre">AIMSim</span></code></p>
+<p><code class="docutils literal notranslate"><span class="pre">aimsim</span></code></p>
 <p>Start <code class="docutils literal notranslate"><span class="pre">AIMSim</span></code> with a prepared configuration YAML file (<code class="docutils literal notranslate"><span class="pre">config.yaml</span></code>):</p>
-<p><code class="docutils literal notranslate"><span class="pre">AIMSim</span> <span class="pre">config.yaml</span></code></p>
+<p><code class="docutils literal notranslate"><span class="pre">aimsim</span> <span class="pre">config.yaml</span></code></p>
 <section id="currently-implemented-fingerprints">
 <h3>Currently Implemented Fingerprints<a class="headerlink" href="#currently-implemented-fingerprints" title="Permalink to this headline"></a></h3>
 <ol class="arabic simple">

docs/_build/html/_sources/README.rst.txt

@@ -55,18 +55,18 @@ Installing AIMSim
 -----------------
 
 ``AIMSim`` can be installed with a single command:
-``pip install AIMSim``
+``pip install aimsim``
 
 Running AIMSim
 --------------
 
 Start ``AIMSim`` with a graphical user interface:
 
-``AIMSim``
+``aimsim``
 
 Start ``AIMSim`` with a prepared configuration YAML file (\ ``config.yaml``\ ):
 
-``AIMSim config.yaml``
+``aimsim config.yaml``
 
 Currently Implemented Fingerprints
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

docs/_build/html/_sources/AIMSim.chemical_datastructures.rst.txt → docs/_build/html/_sources/aimsim.chemical_datastructures.rst.txt

@@ -1,29 +1,29 @@
-AIMSim.chemical\_datastructures package
+aimsim.chemical\_datastructures package
 =======================================
 
 Submodules
 ----------
 
-AIMSim.chemical\_datastructures.molecule module
+aimsim.chemical\_datastructures.molecule module
 -----------------------------------------------
 
-.. automodule:: AIMSim.chemical_datastructures.molecule
+.. automodule:: aimsim.chemical_datastructures.molecule
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.chemical\_datastructures.molecule\_set module
+aimsim.chemical\_datastructures.molecule\_set module
 ----------------------------------------------------
 
-.. automodule:: AIMSim.chemical_datastructures.molecule_set
+.. automodule:: aimsim.chemical_datastructures.molecule_set
    :members:
    :undoc-members:
    :show-inheritance:
 
 Module contents
 ---------------
 
-.. automodule:: AIMSim.chemical_datastructures
+.. automodule:: aimsim.chemical_datastructures
    :members:
    :undoc-members:
    :show-inheritance:

docs/AIMSim.ops.rst → docs/_build/html/_sources/aimsim.ops.rst.txt

@@ -1,37 +1,37 @@
-AIMSim.ops package
+aimsim.ops package
 ==================
 
 Submodules
 ----------
 
-AIMSim.ops.clustering module
+aimsim.ops.clustering module
 ----------------------------
 
-.. automodule:: AIMSim.ops.clustering
+.. automodule:: aimsim.ops.clustering
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.ops.descriptor module
+aimsim.ops.descriptor module
 ----------------------------
 
-.. automodule:: AIMSim.ops.descriptor
+.. automodule:: aimsim.ops.descriptor
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.ops.similarity\_measures module
+aimsim.ops.similarity\_measures module
 --------------------------------------
 
-.. automodule:: AIMSim.ops.similarity_measures
+.. automodule:: aimsim.ops.similarity_measures
    :members:
    :undoc-members:
    :show-inheritance:
 
 Module contents
 ---------------
 
-.. automodule:: AIMSim.ops
+.. automodule:: aimsim.ops
    :members:
    :undoc-members:
    :show-inheritance:

docs/_build/html/_sources/AIMSim.rst.txt → docs/_build/html/_sources/aimsim.rst.txt

@@ -1,4 +1,4 @@
-AIMSim package
+aimsim package
 ==============
 
 Subpackages
@@ -7,26 +7,26 @@ Subpackages
 .. toctree::
    :maxdepth: 4
 
-   AIMSim.chemical_datastructures
-   AIMSim.ops
-   AIMSim.tasks
-   AIMSim.utils
+   aimsim.chemical_datastructures
+   aimsim.ops
+   aimsim.tasks
+   aimsim.utils
 
 Submodules
 ----------
 
-AIMSim.exceptions module
+aimsim.exceptions module
 ------------------------
 
-.. automodule:: AIMSim.exceptions
+.. automodule:: aimsim.exceptions
    :members:
    :undoc-members:
    :show-inheritance:
 
 Module contents
 ---------------
 
-.. automodule:: AIMSim
+.. automodule:: aimsim
    :members:
    :undoc-members:
    :show-inheritance:

docs/AIMSim.tasks.rst → docs/_build/html/_sources/aimsim.tasks.rst.txt

@@ -1,77 +1,77 @@
-AIMSim.tasks package
+aimsim.tasks package
 ====================
 
 Submodules
 ----------
 
-AIMSim.tasks.cluster\_data module
+aimsim.tasks.cluster\_data module
 ---------------------------------
 
-.. automodule:: AIMSim.tasks.cluster_data
+.. automodule:: aimsim.tasks.cluster_data
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.compare\_target\_molecule module
+aimsim.tasks.compare\_target\_molecule module
 ---------------------------------------------
 
-.. automodule:: AIMSim.tasks.compare_target_molecule
+.. automodule:: aimsim.tasks.compare_target_molecule
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.identify\_outliers module
+aimsim.tasks.identify\_outliers module
 --------------------------------------
 
-.. automodule:: AIMSim.tasks.identify_outliers
+.. automodule:: aimsim.tasks.identify_outliers
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.measure\_search module
+aimsim.tasks.measure\_search module
 -----------------------------------
 
-.. automodule:: AIMSim.tasks.measure_search
+.. automodule:: aimsim.tasks.measure_search
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.see\_property\_variation\_with\_similarity module
+aimsim.tasks.see\_property\_variation\_with\_similarity module
 --------------------------------------------------------------
 
-.. automodule:: AIMSim.tasks.see_property_variation_with_similarity
+.. automodule:: aimsim.tasks.see_property_variation_with_similarity
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.task module
+aimsim.tasks.task module
 ------------------------
 
-.. automodule:: AIMSim.tasks.task
+.. automodule:: aimsim.tasks.task
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.task\_manager module
+aimsim.tasks.task\_manager module
 ---------------------------------
 
-.. automodule:: AIMSim.tasks.task_manager
+.. automodule:: aimsim.tasks.task_manager
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.tasks.visualize\_dataset module
+aimsim.tasks.visualize\_dataset module
 --------------------------------------
 
-.. automodule:: AIMSim.tasks.visualize_dataset
+.. automodule:: aimsim.tasks.visualize_dataset
    :members:
    :undoc-members:
    :show-inheritance:
 
 Module contents
 ---------------
 
-.. automodule:: AIMSim.tasks
+.. automodule:: aimsim.tasks
    :members:
    :undoc-members:
    :show-inheritance:

docs/_build/html/_sources/AIMSim.utils.rst.txt → docs/_build/html/_sources/aimsim.utils.rst.txt

@@ -1,29 +1,29 @@
-AIMSim.utils package
+aimsim.utils package
 ====================
 
 Submodules
 ----------
 
-AIMSim.utils.ccbmlib\_fingerprints module
+aimsim.utils.ccbmlib\_fingerprints module
 -----------------------------------------
 
-.. automodule:: AIMSim.utils.ccbmlib_fingerprints
+.. automodule:: aimsim.utils.ccbmlib_fingerprints
    :members:
    :undoc-members:
    :show-inheritance:
 
-AIMSim.utils.plotting\_scripts module
+aimsim.utils.plotting\_scripts module
 -------------------------------------
 
-.. automodule:: AIMSim.utils.plotting_scripts
+.. automodule:: aimsim.utils.plotting_scripts
    :members:
    :undoc-members:
    :show-inheritance:
 
 Module contents
 ---------------
 
-.. automodule:: AIMSim.utils
+.. automodule:: aimsim.utils
    :members:
    :undoc-members:
    :show-inheritance:

docs/_build/html/_sources/modules.rst.txt

@@ -4,7 +4,7 @@ AIMSim
 .. toctree::
    :maxdepth: 4
 
-   AIMSim
+   aimsim
    interfaces
    setup
    tests