Cp feature refactor

.gitignore

@@ -6,3 +6,5 @@ __pycache__/
 .vscode
 # autosklearn
 3.ML_model/autosklearn.ipynb
+# Mac files
+.DS_Store

0.download_data/README.md

@@ -1,22 +1,17 @@
 # Download Data
 
-In this module, we present our method for downloading and combining nucleus morphology data.
+In this module, a labeled dataset is downloaded from `mitocheck_data`.
 
 ### Download/Preprocess Data
 
 Complete instructions for data download and preprocessing can be found at: https://github.com/WayScience/mitocheck_data
 
 ### Usage
 
-In this repository, all training data is downloaded from a version controlled [mitocheck_data](https://github.com/WayScience/mitocheck_data).
-
-An earlier (2006) and later (2015) dataset are both downloaded from `mitocheck_data` and combined by checking if any of the plate/well/frame/coordinates of the cells from the 2006 and 2015 datasets match.
-If all of this information matches, this must be the same cell and is only added once to the final combined dataset.
-This combination method avoids repeating cells in the combined dataset which could lead to biases in the final model.
+In this repository, all labeled data is downloaded from a version controlled [mitocheck_data](https://github.com/WayScience/mitocheck_data).
 
 The version of mitocheck_data used is specified by the hash corresponding to a current commit.
-The current hashes being used are `19bfa5b0959d6b7536f83e7bb85745ba3edf7ff9` for the 2006 dataset and `3ebd0ca7c288f608e9b23987a8ddbabd5476bd8f` for the 2015 dataset.
-These correspond to [mitocheck_data/19bfa5b](https://github.com/WayScience/mitocheck_data/tree/19bfa5b0959d6b7536f83e7bb85745ba3edf7ff9) and [mitocheck_data/3ebd0ca](https://github.com/WayScience/mitocheck_data/tree/3ebd0ca7c288f608e9b23987a8ddbabd5476bd8f) respectively.
+The current hash being used is `e1f86cd007657f8247310b78df92891b22e51621` which corresponds to [mitocheck_data/e1f86cd](https://github.com/WayScience/mitocheck_data/tree/e1f86cd007657f8247310b78df92891b22e51621).
 The `hash` variable can be set in [download_data.ipynb](download_data.ipynb) to change which version of mitocheck_data is being accessed.
 
 ## Step 1: Download Data