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Use straxen documentation building functions to avoid duplicated codes #218

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May 18, 2024
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58 changes: 5 additions & 53 deletions docs/source/build_plugin_pages.py
Original file line number Diff line number Diff line change
@@ -1,31 +1,20 @@
# Script to automatically generate the documentation pages for the plugins
import fuse
from straxen import kind_colors
import os
import graphviz
import shutil
from straxen.docs_utils import add_spaces, add_deps_to_graph_tree

kind_colors = dict(
geant4_interactions="#40C4F3",
clustered_interactions="#FBCE56",
tpc_interactions="#F44E43",
below_cathode_interactions="#F44E43",
interactions_in_roi="#56C46C",
s1_photons="#54E4CF",
s2_photons="#54E4CF",
ap_photons="#54E4CF",
propagated_photons="#54E4CF",
pulse_ids="#54E4CF",
pulse_windows="#F78C27",
raw_records="#0260EF",
individual_electrons="#F44E43",
)
kind_colors.update(fuse.common.kind_colors)

# List of config options that are not tracked
config_options_not_tracked = [
"debug",
"raw_records_file_size_target",
"min_records_gap_length_for_splitting",
"input_file" "path",
"input_file",
"path",
"file_name",
"propagated_s2_photons_file_size_target",
"min_electron_gap_length_for_splitting",
Expand Down Expand Up @@ -124,43 +113,6 @@ def reformat_docstring(docstring):
return y


def add_deps_to_graph_tree(graph_tree, plugin, data_type, _seen=None):
"""Recursively add nodes to graph base on plugin.deps."""
if _seen is None:
_seen = []
if data_type in _seen:
return graph_tree, _seen

# Add new one
graph_tree.node(
data_type,
style="filled",
href="#" + data_type.replace("_", "-"),
fillcolor=kind_colors.get(plugin.data_kind_for(data_type), "grey"),
)
for dep in plugin.depends_on:
graph_tree.edge(data_type, dep)

# Add any of the lower plugins if we have to
for lower_data_type, lower_plugin in plugin.deps.items():
graph_tree, _seen = add_deps_to_graph_tree(graph_tree, lower_plugin, lower_data_type, _seen)
_seen.append(data_type)
return graph_tree, _seen


def add_spaces(x):
"""Add four spaces to every line in x.

This is needed to make html raw blocks in rst format correctly
"""
y = ""
if isinstance(x, str):
x = x.split("\n")
for q in x:
y += " " + q
return y


def create_plugin_documentation_text(st, plugin):

output = ""
Expand Down
46 changes: 4 additions & 42 deletions docs/source/build_release_notes.py
Original file line number Diff line number Diff line change
@@ -1,48 +1,10 @@
# Copied from straxen/docs/source/build_release_notes.py
# https://github.com/XENONnT/straxen/blob/a34a02393001f13755c3f84d15924f83bc86c4db
# /docs/source/build_release_notes.py

import os
from straxen.docs_utils import convert_release_notes

from m2r import convert

header = """
Release notes
==============

"""


def convert_release_notes():
"""Convert the release notes to an RST page with links to PRs."""
if __name__ == "__main__":
this_dir = os.path.dirname(os.path.realpath(__file__))
notes = os.path.join(this_dir, "..", "..", "HISTORY.md")
with open(notes, "r") as f:
notes = f.read()
rst = convert(notes)
with_ref = ""
for line in rst.split("\n"):
# Get URL for PR
if "#" in line:
pr_number = line.split("#")[1]
while len(pr_number):
try:
pr_number = int(pr_number)
break
except ValueError:
# Too many tailing characters to be an int
pr_number = pr_number[:-1]
if pr_number:
line = line.replace(
f"#{pr_number}",
f"`#{pr_number} <https://github.com/XENONnT/fuse/pull/{pr_number}>`_",
)
with_ref += line + "\n"
target = os.path.join(this_dir, "release_notes.rst")

with open(target, "w") as f:
f.write(header + with_ref)


if __name__ == "__main__":
convert_release_notes()
pull_url = "https://github.com/XENONnT/fuse/pull"
convert_release_notes(notes, target, pull_url)
7 changes: 6 additions & 1 deletion docs/source/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -52,5 +52,10 @@ def setup(app):
from build_release_notes import convert_release_notes
from build_plugin_pages import build_all_pages

convert_release_notes()
this_dir = os.path.dirname(os.path.realpath(__file__))
notes = os.path.join(this_dir, "..", "..", "HISTORY.md")
target = os.path.join(this_dir, "release_notes.rst")
pull_url = "https://github.com/XENONnT/fuse/pull"

convert_release_notes(notes, target, pull_url)
build_all_pages()
17 changes: 17 additions & 0 deletions fuse/common.py
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,23 @@
FUSE_PLUGIN_TIMEOUT = 600


kind_colors = dict(
geant4_interactions="#40C4F3",
clustered_interactions="#FBCE56",
tpc_interactions="#F44E43",
below_cathode_interactions="#F44E43",
interactions_in_roi="#56C46C",
s1_photons="#54E4CF",
s2_photons="#54E4CF",
ap_photons="#54E4CF",
propagated_photons="#54E4CF",
pulse_ids="#54E4CF",
pulse_windows="#F78C27",
raw_records="#0260EF",
individual_electrons="#F44E43",
)


@numba.njit()
def dynamic_chunking(data, scale, n_min):
idx_sort = np.argsort(data)
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ numba = ">=0.58.1"
awkward = ">=2.5.1"
uproot = ">=5.2.1"
strax = ">=1.6.0"
straxen = ">=2.2.0"
straxen = ">=2.2.3"

[build-system]
requires = ["poetry-core>=1.0.8", "setuptools"]
Expand Down