Performing demographic model comparisons for either two or three population scenarios.
These workflows are designed to work with the Python package dadi (https://bitbucket.org/gutenkunstlab/dadi) and assume you already have the package installed. You'll need to be familiar with how dadi works, and some of the basic syntax for writing dadi scripts with python. A good resource for all dadi-related questions is the user group: https://groups.google.com/forum/#!forum/dadi-user. Before attempting to use these scripts, read over the user manual for dadi and try running the program with the example files.
If you decide to use these scripts or modify the code for your purposes, please cite:
Portik, D.M., Leaché, A.D., Rivera, D., Blackburn, D.C., Rödel, M.-O., Barej, M.F., Hirschfeld, M., Burger, M., and M.K. Fujita. 2017. Evaluating mechanisms of diversification in a Guineo-Congolian forest frog using demographic model selection. Molecular Ecology, Early View, doi: 10.1111/mec.14266
Daniel Portik
Contact: [email protected] -> [email protected]
Postdoctoral Researcher
University of Arizona
October 2017