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Install and test

Merge branch 'sktime:main' into main #27

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Merge branch 'sktime:main' into main

Merge branch 'sktime:main' into main #27

Workflow file for this run

.github/workflows/test.yml at 4a16787
name: Install and test
on:
push:
branches:
- main
pull_request:
branches:
- main
jobs:
code-quality:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- id: file_changes
uses: trilom/[email protected]
with:
output: " "
- name: List changed files
run: echo '${{ steps.file_changes.outputs.files}}'
- uses: pre-commit/[email protected]
with:
extra_args: --files ${{ steps.file_changes.outputs.files}}
- name: Check for missing init files
run: build_tools/fail_on_missing_init_files.sh
shell: bash
run-notebook-examples:
needs: code-quality
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install .[all_extras,binder,dev,mlflow]
- name: Run example notebooks
run: build_tools/run_examples.sh
shell: bash
run-blogpost-examples:
needs: code-quality
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install .[all_extras,binder,dev,mlflow]
- name: Run example notebooks
run: build_tools/run_blogposts.sh
shell: bash
test-nodevdeps:
needs: code-quality
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install sktime and dependencies
run: |
python -m pip install .
- name: Run pytest-free tests
run: |
python sktime/_nopytest_tests.py
test-nosoftdeps:
needs: code-quality
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install sktime and dependencies
run: |
python -m pip install .[dev]
- name: Show dependencies
run: python -m pip list
- name: Run tests
run: make PYTESTOPTIONS="--cov --cov-report=xml --timeout=600" test_softdeps
test-nosoftdeps-full:
needs: test-nosoftdeps
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- run: git remote set-branches origin 'main'
- run: git fetch --depth 1
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install sktime and dependencies
run: |
python -m pip install .[dev]
- name: Show dependencies
run: python -m pip list
- name: Run tests
run: make PYTESTOPTIONS="--cov --cov-report=xml --timeout=600" test_softdeps_full
test-mlflow:
needs: test-nosoftdeps
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install sktime and dependencies
run: |
python -m pip install .[all_extras,dev,mlflow_tests] --no-cache-dir
- name: Show dependencies
run: python -m pip list
- name: Run tests
run: make PYTESTOPTIONS="--cov --cov-report=xml --timeout=600" test_mlflow
test-cython-estimators:
needs: test-nosoftdeps
runs-on: macos-latest
steps:
- uses: actions/checkout@v4
- run: git remote set-branches origin 'main'
- run: git fetch --depth 1
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install OS packages
run: brew install libomp
- name: Install sktime and dependencies
run: |
python -m pip install .[dev,cython_extras] --no-cache-dir
- name: Show dependencies
run: python -m pip list
- name: Run tests
run: make PYTESTOPTIONS="--cov --cov-report=xml --only_cython_estimators=True --matrixdesign=False --timeout=600" test_check_suite
- name: Publish code coverage
uses: codecov/codecov-action@v4
test-full:
needs: test-nosoftdeps
strategy:
fail-fast: false # to not fail all combinations if just one fail
matrix:
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
os: [ubuntu-latest, macos-latest, windows-latest]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- run: git remote set-branches origin 'main'
- run: git fetch --depth 1
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install sktime and dependencies
run: |
python -m pip install .[all_extras_pandas2,dev,dl] --no-cache-dir
- name: Show dependencies
run: python -m pip list
- name: Show available branches
run: git branch -a
- name: Run tests
run: make test_without_datasets
- name: Publish code coverage
uses: codecov/codecov-action@v4
test-unix-pandas1:
needs: test-nosoftdeps
strategy:
fail-fast: false
matrix:
python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- run: git remote set-branches origin 'main'
- run: git fetch --depth 1
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Install sktime and dependencies
run: |
python -m pip install .[all_extras,dev,pandas1] --no-cache-dir
- name: Show dependencies
run: python -m pip list
- name: Show available branches
run: git branch -a
- name: Run tests
run: make test_without_datasets
- name: Publish code coverage
uses: codecov/codecov-action@v4