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Configurations for 3D feature calc.
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aditiiyer committed Mar 25, 2024
1 parent 8395203 commit 1b1d517
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Showing 10 changed files with 1,104 additions and 15 deletions.
77 changes: 77 additions & 0 deletions cerr/datasets/radiomics_settings/IBSIsettings/IBSI1/IBSI1IDA3.json
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{

"structures": ["GTV-1"],

"imageType": {
"Original": {}
},

"settings": {

"resample": {
},

"perturbation": {
},

"firstOrder": {
"binWidthEntropy": 25,
"offsetForEnergy": 0
},

"texture": {
"binwidth": 25,
"minSegThreshold": -500,
"maxSegThreshold": 400,
"minClipIntensity": -500,
"maxClipIntensity": 400,
"directionality": "3D",
"avgType": "texture",
"voxelOffset": 1,
"patchRadiusVox": [1, 1, 1],
"imgDiffThresh": 0
},

"shape": {
"rcs": []
},

"mapFeaturenamesToIBSI": "yes"

},


"featureClass":{

"shape": {
"featureList": ["all"]
},

"firstOrder": {
"featureList": ["all"]
},

"glcm": {
"featureList": ["all"]
},

"glrlm": {
"featureList": ["all"]

},

"glszm": {
"featureList": ["all"]
},

"gldm": {
"featureList": ["all"]
},

"gtdm": {
"featureList": ["all"]
}

}

}
82 changes: 82 additions & 0 deletions cerr/datasets/radiomics_settings/IBSIsettings/IBSI1/IBSI1IDB1.json
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{

"structures": ["GTV-1"],

"imageType": {
"Original": {}
},

"settings": {

"resample": {
"resolutionXCm": 0.2,
"resolutionYCm": 0.2,
"resolutionZCm": 0,
"interpMethod": "linear",
"intensityRounding": "On"
},

"perturbation": {
},

"firstOrder": {
"binWidthEntropy": 25,
"offsetForEnergy": 0
},

"texture": {
"binNum": 32,
"minSegThreshold": -500,
"maxSegThreshold": 400,
"minClipIntensity": -500,
"maxClipIntensity": 400,
"directionality": "3D",
"avgType": "feature",
"voxelOffset": 1,
"patchRadiusVox": [1, 1, 1],
"imgDiffThresh": 0
},

"shape": {
"rcs": []
},

"mapFeaturenamesToIBSI": "yes"

},


"featureClass":{

"shape": {
"featureList": ["all"]
},

"firstOrder": {
"featureList": ["all"]
},

"glcm": {
"featureList": ["all"]
},

"glrlm": {
"featureList": ["all"]

},

"glszm": {
"featureList": ["all"]
},

"gldm": {
"featureList": ["all"]
},

"gtdm": {
"featureList": ["all"]
}

}

}
83 changes: 83 additions & 0 deletions cerr/datasets/radiomics_settings/IBSIsettings/IBSI1/IBSI1IDB3.json
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{

"structures": ["GTV-1"],

"imageType": {
"Original": {}
},

"settings": {

"resample": {
"resolutionXCm": 0.2,
"resolutionYCm": 0.2,
"resolutionZCm": 0,
"interpMethod": "linear",
"intensityRounding": "On"
},

"perturbation": {
},

"firstOrder": {
"binWidthEntropy": 25,
"offsetForEnergy": 0
},

"texture": {
"binNum": 32,
"minSegThreshold": -500,
"maxSegThreshold": 400,
"minClipIntensity": -500,
"maxClipIntensity": 400,
"directionality": "3D",
"avgType": "texture",
"voxelOffset": 1,
"patchRadiusVox": [1, 1, 1],
"imgDiffThresh": 0
},

"shape": {
"rcs": []
},


"mapFeaturenamesToIBSI": "yes"

},


"featureClass":{

"shape": {
"featureList": ["all"]
},

"firstOrder": {
"featureList": ["all"]
},

"glcm": {
"featureList": ["all"]
},

"glrlm": {
"featureList": ["all"]

},

"glszm": {
"featureList": ["all"]
},

"gldm": {
"featureList": ["all"]
},

"gtdm": {
"featureList": ["all"]
}

}

}
97 changes: 97 additions & 0 deletions cerr/datasets/radiomics_settings/IBSIsettings/IBSI1/IBSI1IDC1.json
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{

"structures": ["GTV-1"],

"imageType": {
"Original": {}
},

"settings": {

"resample": {
"resolutionXCm": 0.2,
"resolutionYCm": 0.2,
"resolutionZCm": 0.2,
"interpMethod": "linear",
"intensityRounding": "On"
},

"padding": {
"method": "expand",
"size": [10,10,10]
},

"perturbation": {
},

"firstOrder" :{
"binWidthEntropy": 25,
"offsetForEnergy": 0
},

"texture" :{
"binwidth": 25,
"minSegThreshold": -1000,
"maxSegThreshold": 400,
"minClipIntensity": -1000,
"maxClipIntensity": 400,
"directionality": "3D",
"avgType": "feature",
"voxelOffset": 1,
"patchRadiusVox": [1, 1, 1],
"imgDiffThresh": 0
},

"shape" :{
"rcs": []
},

"ivh" :{
"binwidth": 2.5,
"xForIxPct": [10, 20, 30, 40, 50, 60, 70, 80, 90],
"xForIxCc": [],
"xForVxPct": [10, 20, 30, 40, 50, 60, 70, 80, 90],
"xForVxAbs": []
},

"mapFeaturenamesToIBSI": "yes"

},


"featureClass":{


"shape": {
"featureList": ["all"]
},

"firstOrder": {
"featureList": ["all"]
},

"glcm": {
"featureList": ["all"]
},

"glrlm": {
"featureList": ["all"]

},

"glszm": {
"featureList": ["all"]
},

"gldm": {
"featureList": ["all"]
},

"gtdm": {
"featureList": ["all"]
}


}

}
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