1.6.3

-fixed extra gene copies losing transcript/exon features in -polish mode
-fixed outputting to stdout broken in 1.6.2

1.6.2

-allows genes with no exons (only CDSs) to be polished
-fixed bug where exon coordinates were off by 2 after polishing
-ignores 'intron' features if present in annotation
-adds header which includes full command line and liftoff version

1.6.1

fixed speed issue with extracting gene sequences from bgzipped files and fixed bug that appended _0 to Parent attribute

1.6.0

Added the polish option. Fixed an off by 1 error when calculating the overlap fraction between features. Fixed formatting of gff for extra_copy_numbers > 9.

1.5.2

minor bug fix with interlap error on --copies option.

1.5.1

fixed features flag with gtf files

1.5.0

Merge branch 'master' of https://github.com/agshumate/Liftoff

1.4.2

Update setup.py

1.4.1

includes two new options (-flank and -overlap). does not output any genes with less that 5% coverage.

1.3.0

Update README.md