initiation for human testing

aidh-ms · Aug 19, 2023 · df78db3 · df78db3
1 parent 86117b1
commit df78db3
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Showing 5 changed files with 8,854 additions and 826 deletions.
diff --git a/...rate_experiment_data/generate_tests.ipynb → generate_tests.ipynb b/...rate_experiment_data/generate_tests.ipynb → generate_tests.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 114,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -12,20 +12,20 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 115,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
-    "creatinine = pd.read_csv('tests/generate_test/data/creatinine.csv')\n",
-    "urineoutput = pd.read_csv('tests/generate_test/data/urineoutput.csv')\n",
-    "demographics = pd.read_csv('tests/generate_test/data/demographics.csv')\n",
-    "rrt = pd.read_csv('tests/generate_test/data/rrt.csv')\n",
-    "weight = pd.read_csv('tests/generate_test/data/weight.csv')\n"
+    "creatinine = pd.read_csv('tests/experiment/data/creatinine.csv')\n",
+    "urineoutput = pd.read_csv('tests/experiment/data/urineoutput.csv')\n",
+    "demographics = pd.read_csv('tests/experiment/data/demographics.csv')\n",
+    "rrt = pd.read_csv('tests/experiment/data/rrt.csv')\n",
+    "weight = pd.read_csv('tests/experiment/data/weight.csv')\n"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 116,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -143,7 +143,7 @@
        "[7317 rows x 3 columns]"
       ]
      },
-     "execution_count": 116,
+     "execution_count": 5,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -154,7 +154,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 117,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -170,7 +170,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 118,
+   "execution_count": 7,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -180,7 +180,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 119,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [
     {
@@ -189,7 +189,7 @@
        "(140,)"
       ]
      },
-     "execution_count": 119,
+     "execution_count": 8,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -200,7 +200,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 120,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -209,7 +209,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 121,
+   "execution_count": 10,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -218,7 +218,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 122,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -227,7 +227,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 123,
+   "execution_count": 12,
    "metadata": {},
    "outputs": [
     {
@@ -236,7 +236,7 @@
        "137"
       ]
      },
-     "execution_count": 123,
+     "execution_count": 12,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -248,7 +248,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 124,
+   "execution_count": 13,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -260,7 +260,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 125,
+   "execution_count": 14,
    "metadata": {},
    "outputs": [
     {
@@ -378,7 +378,7 @@
        "[128 rows x 3 columns]"
       ]
      },
-     "execution_count": 125,
+     "execution_count": 14,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -393,7 +393,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 126,
+   "execution_count": 15,
    "metadata": {},
    "outputs": [
     {
@@ -511,7 +511,7 @@
        "[1049 rows x 3 columns]"
       ]
      },
-     "execution_count": 126,
+     "execution_count": 15,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -525,7 +525,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 127,
+   "execution_count": 16,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -541,7 +541,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 128,
+   "execution_count": 17,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -559,17 +559,17 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 129,
+   "execution_count": 19,
    "metadata": {},
    "outputs": [],
    "source": [
-    "ana.process_stays().to_csv(\"tests/generate_test/data/test_machine_aki.csv\")\n",
-    "ana.process_stays().to_excel(\"tests/generate_test/data/test_machine_aki.xlsx\")"
+    "ana.process_stays().to_csv(\"tests/experiment/data/test_machine_aki.csv\")\n",
+    "ana.process_stays().to_excel(\"tests/experiment/data/test_machine_aki.xlsx\")"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 130,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -578,7 +578,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 131,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {