adds basic export task and needed variables

env.sample

@@ -1,14 +1,22 @@
 SECRET_KEY="SOME_KEY"
 DEBUG="True"
 
+# Setup for Open Humans backend
 OPENHUMANS_APP_BASE_URL="http://127.0.0.1:5000/"
 OPENHUMANS_CLIENT_ID="CLIENT_ID"
 OPENHUMANS_CLIENT_SECRET="CLIENT_SECRET"
 
 ON_HEROKU='True'
 
+# Setup for Open Clinica
+## Username for adding participants & scheduling data ('site investigator' role)
+
 OPENCLINICA_USERNAME="Username"
-OPENCLINICA_PASSWORD="Password" 
+OPENCLINICA_PASSWORD="Password"
+
+## Username for exporting data ('data manager' role)
+OPENCLINICA_DATA_USERNAME="AnotherUsername"
+OPENCLINICA_DATA_PASSWORD="Password"
 
 
 OPENCLINICA_STUDY="DEMO_NAME(TEST)"

main/helpers.py

@@ -6,12 +6,16 @@
 from django.shortcuts import reverse
 
 
-def get_access_token():
+def get_access_token(download=False):
     url = 'https://opencovid.build.openclinica.io/user-service/api/oauth/token'
     headers = {'Content-Type': "application/json"}
     data = json.dumps(
-        {'username': settings.OPENCLINICA_USERNAME, 'password': settings.OPENCLINICA_PASSWORD}
+        {'username': settings.OPENCLINICA_SITE_USERNAME, 'password': settings.OPENCLINICA_SITE_PASSWORD}
     )
+    if download:
+        data = json.dumps(
+            {'username': settings.OPENCLINICA_DATA_USERNAME, 'password': settings.OPENCLINICA_DATA_PASSWORD}
+        )
     response = requests.post(url, headers=headers, data=data)
     if response.status_code == 200:
         return response.text

main/management/commands/get_data.py

@@ -0,0 +1,21 @@
+from django.core.management.base import BaseCommand
+import requests
+from main.helpers import get_access_token
+
+
+class Command(BaseCommand):
+    help = "Exports data for all members"
+
+    def handle(self, *args, **options):
+        headers = {
+            "Authorization": "bearer {}".format(get_access_token(download=True)),
+            "Accept": "application/json"
+            }
+        url = "https://opencovid.openclinica.io/OpenClinica/pages/auth/api/clinicaldata/S_DEMO_BGT(TEST)/91048557/*/*?includeAudits=n&includeDNs=n&includeMetadata=y&showArchived=n"
+        # download all data:
+        # url = "https://opencovid.openclinica.io/OpenClinica/pages/auth/api/clinicaldata/S_DEMO_BGT(TEST)/*/*/*?includeAudits=n&includeDNs=n&includeMetadata=y&showArchived=n"
+        response = requests.get(url, headers=headers)
+        print(response.json())
+
+        # TODO: so far it doesn't process the data, next step:
+        # - Save data to Open Humans for each member

main/management/commands/send_emails.py

@@ -1,14 +1,16 @@
 from django.core.management.base import BaseCommand
 from main.models import SurveyAccount
-import datetime
-from main.helpers import create_openclinica_event, get_openclinica_token
+from main.helpers import get_openclinica_token
 from main.helpers import send_user_survey_link
 
+
 class Command(BaseCommand):
     help = "Updates all data for all members"
 
     def handle(self, *args, **options):
         for survey_account in SurveyAccount.objects.all():
-            #create_openclinica_event(survey_account, "SE_DAILY", str(datetime.date.today()))
+            # we no longer create events on sending out email, it's dynamically
+            # done when clicking the email link now
+            # create_openclinica_event(survey_account, "SE_DAILY", str(datetime.date.today()))
             get_openclinica_token(survey_account)
             send_user_survey_link(survey_account)

open_survey/settings.py

@@ -137,9 +137,14 @@
 LOGIN_REDIRECT_URL = "/"
 LOGOUT_REDIRECT_URL = "/"
 
-OPENCLINICA_USERNAME = os.getenv("OPENCLINICA_USERNAME", "OPENCLINICA_TOKEN")
+# OC user for adding new participants & scheduling events
+OPENCLINICA_SITE_USERNAME = os.getenv("OPENCLINICA_USERNAME", "OPENCLINICA_TOKEN")
+OPENCLINICA_SITE_PASSWORD = os.getenv("OPENCLINICA_PASSWORD", "OPENCLINICA_TOKEN")
+
+# OC user for exporting data from participants
+OPENCLINICA_DATA_USERNAME = os.getenv("OPENCLINICA_DATA_USERNAME", "OPENCLINICA_TOKEN")
+OPENCLINICA_DATA_PASSWORD = os.getenv("OPENCLINICA_DATA_PASSWORD", "OPENCLINICA_TOKEN")
 
-OPENCLINICA_PASSWORD = os.getenv("OPENCLINICA_PASSWORD", "OPENCLINICA_TOKEN")
 
 OPENCLINICA_STUDY = os.getenv("OPENCLINICA_STUDY", "OPENCLINICA_STUDY ")