Setup distribution of test data with Meson

lib/easel/meson.build

@@ -193,7 +193,7 @@ easel_sources = [
   'interface_lapack.c',
 ]
 
-easel_lib = library(
+easel_lib = static_library(
   'easel',
   easel_sources,
   dependencies : [math, threads, mpi],

lib/hmmer/meson.build

@@ -106,7 +106,7 @@ hmmer_sources = [
   'fm_ssv.c'
 ]
 
-hmmer_lib = library(
+hmmer_lib = static_library(
   'hmmer',
   [hmmer_sources, impl_sources],
   dependencies : [math, threads, mpi, easel_dep],

meson.build

@@ -25,5 +25,4 @@ destatic = generator(
 )
 
 subdir('lib')
-# subdir('include')
 subdir('pyhmmer')

pyhmmer/tests/data/hmms/bin/meson.build

@@ -0,0 +1,12 @@
+sources = [
+    'PF02826.h3m',
+    'PKSI-AT.h3m',
+    'RF00001.h3m',
+    'RREFam.h3m',
+    'Thioesterase.h3m',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'hmms' / 'bin'
+)

pyhmmer/tests/data/hmms/db/meson.build

@@ -0,0 +1,27 @@
+sources = [
+    'PF02826.hmm',
+    'PF02826.hmm.h3f',
+    'PF02826.hmm.h3i',
+    'PF02826.hmm.h3m',
+    'PF02826.hmm.h3p',
+    'PKSI-AT.hmm',
+    'PKSI-AT.hmm.h3f',
+    'PKSI-AT.hmm.h3i',
+    'PKSI-AT.hmm.h3m',
+    'PKSI-AT.hmm.h3p',
+    'RREFam.hmm',
+    'RREFam.hmm.h3f',
+    'RREFam.hmm.h3i',
+    'RREFam.hmm.h3m',
+    'RREFam.hmm.h3p',
+    'Thioesterase.hmm',
+    'Thioesterase.hmm.h3f',
+    'Thioesterase.hmm.h3i',
+    'Thioesterase.hmm.h3m',
+    'Thioesterase.hmm.h3p',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'hmms' / 'db'
+)

pyhmmer/tests/data/hmms/meson.build

@@ -0,0 +1,4 @@
+subdir('bin')
+subdir('db')
+subdir('txt')
+subdir('txt2')

pyhmmer/tests/data/hmms/txt/meson.build

@@ -0,0 +1,16 @@
+sources = [
+    'bmyD.hmm',
+    'KR.hmm',
+    'laccase.hmm',
+    'LuxC.hmm',
+    'PF02826.hmm',
+    'PKSI-AT.hmm',
+    'RF00001.hmm',
+    'RREFam.hmm',
+    'Thioesterase.hmm',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'hmms' / 'txt'
+)

pyhmmer/tests/data/hmms/txt2/meson.build

@@ -0,0 +1,9 @@
+sources = [
+    'RREFam.hmm2',
+    'Thioesterase.hmm2',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'hmms' / 'txt2'
+)

pyhmmer/tests/data/jackhmmer/meson.build

@@ -0,0 +1,17 @@
+sources = [
+    'KR-1_bkup.sto',
+    'KR-1.sto',
+    'KR-2.sto',
+    'KR-3.sto',
+    'KR-4.sto',
+    'KR-5.sto',
+    'KR-6.sto',
+    'p12748-1.sto',
+    'p12748-2.sto',
+    'p12748-3.sto',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'jackhmmer'
+)

pyhmmer/tests/data/meson.build

@@ -0,0 +1,5 @@
+subdir('hmms')
+subdir('jackhmmer')
+subdir('msa')
+subdir('seqs')
+subdir('tables')

pyhmmer/tests/data/msa/meson.build

@@ -0,0 +1,11 @@
+sources = [
+    'laccase.clw',
+    'LuxC.faa',
+    'LuxC.hmmalign.sto',
+    'LuxC.sto',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'msa'
+)

pyhmmer/tests/data/seqs/meson.build

@@ -0,0 +1,15 @@
+sources = [
+    '1390.SAMEA104415756.OFHT01000022.fna',
+    '1390.SAMEA104415756.OFHT01000024.fna',
+    '938293.PRJEB85.HG003687.faa',
+    'BGC0001090.gbk',
+    'bmyD.fna',
+    'CP040672.1.genes_100.fna',
+    'LuxC.faa',
+    'PKSI.faa',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'seqs'
+)

pyhmmer/tests/data/tables/meson.build

@@ -0,0 +1,16 @@
+sources = [
+    'A0A089QRB9.domtbl',
+    'bmyD1.tbl',
+    'bmyD2.tbl',
+    'bmyD3.tbl',
+    'PF02826.domtbl',
+    'PF02826.tbl',
+    'RREFam.domtbl',
+    'RREFam.scan.tbl',
+    'RREFam.tbl',
+]
+
+python.install_sources(
+    sources,
+    subdir : 'pyhmmer' / 'tests' / 'data' / 'tables'
+)

pyhmmer/tests/meson.build

@@ -0,0 +1,17 @@
+python_sources = [
+    '__init__.py',
+    'requirements.txt',
+    'test_doctest.py',
+    'test_errors.py',
+    'test_hmmer.py',
+    'utils.py',
+]
+
+python.install_sources(
+    python_sources,
+    subdir : 'pyhmmer' / 'tests',
+)
+
+subdir('data')
+subdir('test_easel')
+subdir('test_plan7')

pyhmmer/tests/test_easel/meson.build

@@ -0,0 +1,21 @@
+python_sources = [
+    '__init__.py',
+    'test_alphabet.py',
+    'test_bitfield.py',
+    'test_block.py',
+    'test_gencode.py',
+    'test_keyhash.py',
+    'test_matrix.py',
+    'test_msa.py',
+    'test_msafile.py',
+    'test_randomness.py',
+    'test_sequence.py',
+    'test_sequencefile.py',
+    'test_ssi.py',
+    'test_vector.py',
+]
+
+python.install_sources(
+    python_sources, 
+    subdir : 'pyhmmer' / 'tests' / 'test_easel',
+)

pyhmmer/tests/test_plan7/meson.build

@@ -0,0 +1,21 @@
+python_sources = [
+    '__init__.py',
+    'test_alignment.py',
+    'test_background.py',
+    'test_block.py',
+    'test_builder.py',
+    'test_hit.py',
+    'test_hmm.py',
+    'test_hmmfile.py',
+    'test_optimizedprofile.py',
+    'test_pipeline.py',
+    'test_profile.py',
+    'test_tophits.py',
+    'test_tracealigner.py',
+    'test_traces.py',
+]
+
+python.install_sources(
+    python_sources, 
+    subdir : 'pyhmmer' / 'tests' / 'test_plan7',
+)