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Record query object in every TopHits object. #78

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merged 11 commits into from
Oct 8, 2024
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@althonos althonos commented Oct 8, 2024

This PR fixes #76 by recording the original query object passed to the Pipeline, so that the attributes can still be accessed when processing queries.

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codecov bot commented Oct 8, 2024

Codecov Report

Attention: Patch coverage is 69.47368% with 29 lines in your changes missing coverage. Please review.

Project coverage is 79.27%. Comparing base (580f884) to head (41c377e).
Report is 17 commits behind head on master.

Files with missing lines Patch % Lines
pyhmmer/plan7.pyx 69.64% 17 Missing ⚠️
pyhmmer/daemon.pyx 0.00% 9 Missing ⚠️
pyhmmer/hmmer.py 88.88% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master      #78      +/-   ##
==========================================
+ Coverage   79.25%   79.27%   +0.02%     
==========================================
  Files           9        9              
  Lines        7250     7243       -7     
  Branches       17       17              
==========================================
- Hits         5746     5742       -4     
+ Misses       1490     1487       -3     
  Partials       14       14              
Flag Coverage Δ
v3.10 79.27% <69.47%> (+0.02%) ⬆️
v3.11 79.27% <69.47%> (+0.02%) ⬆️
v3.12 79.27% <69.47%> (+0.02%) ⬆️
v3.7 79.24% <69.47%> (+0.02%) ⬆️
v3.8 79.27% <69.47%> (+0.02%) ⬆️
v3.9 79.27% <69.47%> (+0.02%) ⬆️

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@althonos althonos merged commit b2627eb into master Oct 8, 2024
41 of 42 checks passed
@althonos althonos deleted the top-hits-query branch October 8, 2024 14:26
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