v0.5.0

Added

• plan7.PipelineSearchTargets to reduce the overhead when searching the same sequences several times with different. query profiles.
• TopHits.copy method to duplicate a TopHits instance.
• TopHits.merge method to merge hits obtained with the same query on different targets.
• Buffer protocol implementation for pyhmmer.easel.Bitfield.

Changed

• Renamed TopHits.included and TopHits.reported properties to TopHits.hits_included and TopHits.hits_included.
• MSAFile and SequenceFile are now directly in digital mode if they are instantiated with digital=True.
• SequenceFile.parse can now return a sequence in digital mode.
• Reorganized tests to make then runnable from a site install.

Fixed

• Usage of memcpy in contexts where it may have had undefined behaviour.
• VectorF.__eq__ crashing when comparing two empty objects.
• SequenceFile and MSAFile not closing file handles when raising an error in __init__.