Possible path-related improvements

[asl]

• Add support for gapped paths (e.g. from scaffolds)
• Load SPAdes *.paths file directly

[ekg]

Path position queries: find me the node at a given path position. Given a node, what path positions is it at (or near).

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On Wed, Sep 22, 2021, 06:13 Anton Korobeynikov ***@***.***> wrote: - Add support for gapped paths (e.g. from scaffolds) - Load SPAdes *.paths file directly — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#4>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQEIH4E77OEVRUOGPSFTUDFJXVANCNFSM5EQKYNKA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[asl]

@ekg Small clarification: for the second "Given a node, what path positions is it at (or near)" – you mean for a node find all paths that traverse that node and what are the position in them? How would you visualize the results?

[ekg]

In gfaestus we have a window that shows this. I guess you could use one of the two side bars to do this? Btw, I really want to test, but need to do a system update to get Qt6.

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On Mon, May 2, 2022, 18:21 Anton Korobeynikov ***@***.***> wrote: @ekg <https://github.com/ekg> Small clarification: for the second "Given a node, what path positions is it at (or near)" – you mean for a node find all paths that traverse that node and what are the position in them? How would you visualize the results? — Reply to this email directly, view it on GitHub <#4 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABDQENQO6OLE5PTLEDUV23VH76KDANCNFSM5EQKYNKA> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[asl]

@ekg We are planning to provide pre-built snapshots. Stay tuned! :)