Merge pull request easybuilders#12241 from boegel/eb433

update release notes + bump version for EasyBuild v4.3.3

RELEASE_NOTES

@@ -3,8 +3,121 @@ For more detailed information, please see the git log.
 
 These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html.
 
-The latest version of easybuild-easyconfig provides 11,054 easyconfig files, for 2,175 different software packages,
-incl. 32 different (compiler) toolchains.
+The latest version of easybuild-easyconfig provides 11,475 easyconfig files, for 2,248 different software packages,
+incl. 33 different (compiler) toolchains.
+
+
+v4.3.3 (February 23rd 2021)
+---------------------------
+
+update/bugfix release
+
+- add easyconfig for new iibff toolchain: iibff/2020b (#12185)
+- added easyconfigs for 6 new toolchains:
+  - gobff/2020b (#12098), goblf/2018b (#6615), gomkl/2020b (#12198), iimkl/2018a (#6092), iomkl/2019b (#11981), iomkl/2020b (#12009)
+- added example easyconfig files for 72 new software packages:
+  - AOCC (#11868), CHERAB (#7141), CaDiCaL (#11966), CellRanger-ARC (#12114), CuPy (#11749), DFA (#11979),
+    FIGARO (#11924), FIRESTARTER (#12160), FIt-SNE (#8630), GPyTorch (#12010), GSEA (#10395), GetOrganelle (#11948),
+    Glucose (#11965), GraPhlAn (#10707), ITSx (#10558), Kaleido (#11998), LAPACK (#6615), LSD2 (#11903),
+    Lingeling (#11964), MPB (#7026), MiniCARD (#11963), MiniSat (#11962), NGSpeciesID (#11918), NanopolishComp (#11823),
+    Nsight-Compute (#12043),  Nsight-Systems (#12042), PHANOTATE (#8667), PIPITS (#10558), PyClone (#11940),
+    PySAT (#12000), RNAmmer (#7262), Raysect (#7141), SICER2 (#12200), SOCI (#12045), SeisSol (#7194), SignalP (#11862),
+    Stack (#11310), SuperLU_DIST (#11693), Teneto (#12056), Transformers (#12032), YANK (#11742), Z3 (#12013),
+    bgen (#7456, #11867), bgen-reader (#7456, #11867), bpytop (#12040), byobu (#11932), chi2comb (#11867),
+    cuTENSOR (#11914), dd (#11978), decona (#11891), dicom2nifti (#11955), eccodes-python (#12083), fftlib (#11944),
+    flatbuffers-python (#12148), fpocket (#11980), gh (#11851), intel-compilers (oneAPI) (#11982), libGDSII (#7026),
+    libpci (#11871), liknorm (#7456, #11867), limix (#7456, #11867), logaddexp (#11867), neptune-client (#11985),
+    plinkQC (#12068), preCICE (#11886), py-aiger (#11999), py-aiger-bdd (#11999), pytest-xdist (#11883, #11893),
+    samblaster (#7378), terastructure (#12197), typing-extensions (#11636), webin-cli (#8674),
+- added additional easyconfigs for various supported software packages, including:
+  - ack 3.4.0, AmberTools 20, AMD-LibM 3.6.0-4, AMD-RNG 2.2, AMD-SecureRNG 2.2, annovar 20191024, ASE 3.21.1,
+    AUGUSTUS 3.4.0, Bazel 3.7.2, bcgTree 1.1.0, BLAST+ 2.11.0, Bonito 0.3.5, Bowtie2 2.4.2, causalml 0.8.0-20200909,
+    CGAL 5.2, ConnectomeWorkbench 1.4.2, CUDAcore 11.2.1, cuDNN 8.0.5.39, dcm2niix 1.0.20201102, DendroPy 4.5.2,
+    DIAMOND 0.9.36 + 2.0.6, ecCodes 2.20.0, ELPA 2020.11.001, Emacs 27.1, FusionCatcher 1.30, gensim 3.8.3, GHC 8.6.5,
+    gnuplot 5.4.1, GPAW 21.1.0, Graphviz 2.44.1, GROMACS 2020.5, Gurobi 9.1.0, HH-suite 3.3.0, HMMER 3.3.2, HTSlib 1.11,
+    Horovod 0.21.1, imbalanced-learn 0.7.0, impi 2021.1.1, inferCNV 1.3.3, ITK 5.1.2, IQ-TREE 2.1.2, JasPer 2.0.24,
+    JUBE 2.4.1, libgit2 1.1.0, libzip 1.7.3, likwid 5.1.0, MariaDB 10.5.8, medaka 1.2.0, Meep 1.6.0, mkl-service 2.3.0,
+    MPICH 3.3.2, muParser 2.3.2, NanoComp 1.13.1, NanoPlot 1.33.0, networkx 2.5, NLTK 3.5, numba 0.52.0, NVHPC 20.11,
+    nvtop 1.1.0, OpenCoarrays 2.9.2, OpenFOAM v2012, OpenJPEG 2.4.0, OpenMPI 4.1.0, parasail 2.4.2, PLUMED 2.6.2,
+    PostgreSQL 13.2, pydicom 2.1.2, PyMC3 3.11.0, python-parasail 1.2.2, PyTorch 1.7.1, QIIME2 2020.11,
+    QuantumESPRESSO 6.7, QuickFF 2.2.7, R 4.0.3, R-bundle-Bioconductor 3.12, ReFrame 3.4.1, RMBlast 2.10.0, RSEM 1.3.3,
+    Salmon 1.4.0, scikit-build 0.11.1, SciPy-bundle 2020.03 w/ Python 2.7.18, Seaborn 0.11.1, SEPP 4.4.0,
+    SHAPEIT4 4.2.0, SpaceRanger 1.2.2, Stacks 2.54, STAR 2.7.7.a, statsmodels 0.12.1, SuiteSparse 5.8.1, tbb 2020.3,
+    TensorFlow 1.15.5 + 2.4.1, Theano 1.1.2, torchvision 0.8.2, V8 3.4.0, Wannier90 3.1.0
+- minor enhancements, including:
+  - enable building of QtWebEngine in Qt5 easyconfig using foss/2017b or intel/2017b (#7302)
+  - enable NVPTX offload in GCCcore 9.3.0 easyconfig (#11839)
+  - also build shared library in recent HDF easyconfigs (#11847)
+  - add support for HDF4 to GDAL v3.0.2 and v3.0.4 (#11855)
+  - add patch for magma 2.5.4 with fosscuda/2019b to allow any sm_* value to be passed via GPU_TARGET (#11861)
+  - add missing M4 build dependency to recent SuiteSparse versions (#11869)
+  - enable tests for most recent Bazel versions (3.x) (#11894)
+  - enable gipaw in QuantumESPRESSO 6.6 easyconfig (#11905)
+  - add RCAL + sensemakr extensions to R 4.0.0 (#11921)
+  - add additional extensions to R v4.0.3 easyconfig (#11922, #12057)
+  - improve sanity_check_paths for AMD-LibM (#11933)
+  - symlink include/lib subdirs + enhance sanity_check_paths for AMD-RNG v2.2-4 (#11934)
+  - improve sanity_check_paths for AMD-SecureRNG (#11935)
+  - update Clang 10+ dependencies & build extra tools (#12013)
+  - add Inline extension to recent Perl easyconfigs (5.30+) (#12029)
+  - add EnsDb.Hsapiens.v86 to Bioconductor 3.11 (#12078)
+  - add sanity check command for bam-readcount v0.8.0 to check --version output (#12092)
+  - add EnsDb.Hsapiens.v75 + Signac extensions to R-bundle-Bioconductor 3.12 (#12174)
+  - add tensorboard profile plugin to recent TensorFlow 2.x easyconfigs (#12136, #12137)
+- various bug fixes, including:
+  - added missing space in 'configopts' in ParaView 5.8.0 easyconfigs using 2020a toolchain (#10989)
+  - use bfd linker for glibc 2.30 (#11331)
+  - add missing moduleclass in UCLUST easyconfig (#11477)
+  - don't disable optarch for Clang 11.0.0 (#11814)
+  - add patch to fix miscompilation bug on POWER for GCC 8.x and 9.x (#11837)
+  - fix compilation of TensorFlow 2.3.1 with CUDA and glibc 2.26 on POWER (#11859)
+  - disable building of manpages for GDCM to fix installation problem with docbook (#11866)
+  - add patch for LLVM 6.0.0 to fix missing exported symbol LLVMInitializeInstCombine (#11873)
+  - fix name of source file for GDRCopy v2.1 (#11887)
+  - fix Tombo to work with rpy2 v3 when creating DataFrames (#11892)
+  - fix GCCcore 8.1.0 w.r.t. removed sys/ustat.h in glibc 2.28 (#11896)
+  - add git as a dependency to GitPython version 3.x (#11902)
+  - fix undefined __ieee128 on ppc64le with glibc 2.26 for magma (#11930) and PyTorch (#11936)
+  - update Hypre git location for PETSc 3.11.0 using downloaded dependencies (#11947)
+  - fix source URL in expat easyconfigs (and consistently add custom sanity_check_paths) (#11960)
+  - use libpng provided by EasyBuild in VTK to fix build issue on ppc64le (#11990)
+  - add missing pkg-config build dependency for GObject-Introspection v1.66.1 (#11949)
+  - add missing plotly-orca dependency for NanoPlot (#11967, #12015)
+  - add patch for Boost 1.74.0 to fix missing include file (#12007)
+  - fix for "error: 'runtime_error' is not a member of 'std'" in qtlocation for Qt5 v5.14.2 (#12012)
+  - fix homepage for gnuplot 5.2.8, use http:// since homepage is not reachable via https:// (#12047)
+  - fix OS dependencies for libfabric (#12058)
+  - fix vector mul and div with broadcasts in -masm=intel mode in GCCcore v9.3.0 (#12065)
+  - add missing ESMF dependency in NCO easyconfigs (#12071, #12072)
+  - add patch to fix version for bam-readcount 0.8.0 (#12075)
+  - add missing Perl build dep for (recent) libcerf versions, required for 'pod2html' command (#12085)
+  - add missing bzip2 dependency to recent ncbi-vdb easyconfigs (#12120)
+  - add missing Perl build dependency for BLIS 0.8.0 (#12146)
+  - use https://sources.easybuild.io as fallback source URL for UDUNITS (#12049, #12156, #12182)
+  - correct the GCC version check to allow IBM VSX builds of GROMACS 2020.4 and 2020.5 (#12159)
+  - add missing mkl-service dependency for Theano built with intel/2019b + enhance sanity check (#12172)
+  - add patches to fix test problems with p4est 2.2 (#12028)
+  - fix build of Bison using older system GCC (v4.x) (#12203)
+  - fix lack of optimisation for SHAPEIT4 v4.1.3 (#12206)
+  - add missing gnuplot dependency for OpenFOAM from v2.4.0 to v6 (#11801, #12208)
+  - fix source URL for libspatialite (#12213)
+  - add 'archive' fallback source URL to MAGMA easyconfigs (#12214)
+  - fix checksum for patch in make 4.2.1 easyconfig using GCC/7.3.0-2.30 (#12223)
+- other changes:
+  - replace easyconfigs for bpp-core/bpp-phyl/bpp-seq v2.4.1 with a single easyconfig for BioPP v2.4.1 (using Bundle easyblock) (#11609)
+  - add CESM-deps to whitelist in check for custom sanity_check_paths (#11916)
+  - include '-4' in version for AMD-SecureRNG v2.2-4 (#11934, #11935)
+  - switch to using python-parasail and tqdm dependencies in Bonito easyconfigs (#11937)
+  - rename orca to plotly-orca (#12015)
+  - remove duplicate extensions in R 3.5.x easyconfigs, and add test to detect such issues (#12059)
+  - remove Python dependency from ecCodes v2.17.0 since it doesn't provide Python bindings (#12084)
+  - update Java/1.8 wrapper to Java 1.8.0_281 (#11928, #12088)
+  - update Bison (build) dependency for flex built with system compiler to v3.5.3 (#12111)
+  - make symlinking of posix.so in test suite configuration conditional (#12123)
+  - move make 4.3 easyconfigs to GCCcore toolchain (#12166)
+  - move most recent BLIS and libFLAME easyconfigs from GCC to GCCcore (#12168)
+  - rename SNAP to SNAP-HMM and update easyconfig (#12218)
+
 
 v4.3.2 (December 10th 2020)
 ---------------------------
@@ -74,7 +187,6 @@ update/bugfix release
 
 - added easyconfigs for 2 new toolchains:
   - fosscuda/2020a (#11424) and intelcuda/2020a (#11425)
-
 - added example easyconfig files for 75 new software packages:
   - Bsoft (#6551, #11537), causallift (#11436), CAVIAR (#11158), CCfits (#11505), Cereal (#11506),
     CFDEMcoupling (#6465), Check (#11295), chewBBACA (#11418), COMSOL (#11513), CUDAcore (#11295), Dalton (#5808),

setup.py

@@ -44,7 +44,7 @@
 # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like
 #   UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0'
 # This causes problems further up the dependency chain...
-VERSION = '4.3.3.dev0'
+VERSION = '4.3.3'
 
 MAJ_VER = VERSION.split('.')[0]
 MAJMIN_VER = '.'.join(VERSION.split('.')[0:2])