no docs found for 'BAT.MCMCChainState' in `@docs` block in src/internal_api.md:34-98 ```@docs BAT.AbstractSampleGenerator BAT.AnySampleable BAT.BasicMvStatistics BAT.BATMeasure BAT.BATPushFwdMeasure BAT.BATPwrMeasure BAT.BATWeightedMeasure BAT.CholeskyPartialWhitening BAT.CholeskyWhitening BAT.DensitySampleMeasure BAT.ENSAutoProposal BAT.ENSBound BAT.ENSEllipsoidBound BAT.ENSMultiEllipsoidBound BAT.ENSNoBounds BAT.ENSProposal BAT.ENSRandomWalk BAT.ENSSlice BAT.ENSUniformly BAT.FullMeasureTransform BAT.LFDensity BAT.LFDensityWithGrad BAT.LogDVal BAT.MCMCChainState BAT.MCMCSampleGenerator BAT.MeasureLike BAT.NoWhitening BAT.OnlineMvCov BAT.OnlineMvMean BAT.OnlineUvMean BAT.OnlineUvVar BAT.SampleTransformation BAT.StandardMvNormal BAT.StandardMvUniform BAT.StandardUvNormal BAT.StandardUvUniform BAT.StatisticalWhitening BAT.UnshapeTransformation BAT.WhiteningAlgorithm BAT.logvalof BAT.bat_report! BAT.fft_autocor BAT.fft_autocov BAT.argchoice_msg BAT.bg_R_2sqr BAT.checked_logdensityof BAT.drop_low_weight_samples BAT.find_marginalmodes BAT.get_bin_centers BAT.getlikelihood BAT.getprior BAT.gr_Rsqr BAT.is_log_zero BAT.issymmetric_around_origin BAT.log_zero_density BAT.repetition_to_weights BAT.smallest_credible_intervals BAT.sum_first_dim BAT.supports_rand BAT.trunc_logpdf_ratio BAT.truncate_dist_hard BAT.measure_support ```

failed to run `@example` block in src/tutorial.md:252-255 ```@example tutorial samples = bat_sample(posterior, MCMCSampling()).result nothing # hide ``` exception = MCMC tuning of 4 chains aborted after 30 cycle(s). Stacktrace: [1] mcmc_burnin!(outputs::Nothing, mcmc_states::Vector{MCMCState}, sampling::MCMCSampling{PriorToGaussian, MCMCChainPoolInit, MCMCMultiCycleBurnin, BrooksGelmanConvergence, typeof(BAT.nop_func)}, callback::typeof(BAT.nop_func)) @ BAT ~/work/BAT.jl/BAT.jl/src/samplers/mcmc/multi_cycle_burnin.jl:82 [2] bat_sample_impl(target::PosteriorMeasure{DensityInterface.LogFuncDensity{Main.__atexample__named__tutorial.var"#3#4"{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{Int64}, typeof(Main.__atexample__named__tutorial.fit_function)}}, BAT.BATDistMeasure{ValueShapes.NamedTupleDist{(:a, :mu, :sigma), Tuple{Distributions.Product{Distributions.Continuous, Distributions.Weibull{Float64}, Vector{Distributions.Weibull{Float64}}}, Distributions.Product{Distributions.Continuous, Distributions.Uniform{Float64}, Vector{Distributions.Uniform{Float64}}}, Distributions.Weibull{Float64}}, Tuple{ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ScalarShape{Real}}}, NamedTuple}}}, sampling::MCMCSampling{PriorToGaussian, MCMCChainPoolInit, MCMCMultiCycleBurnin, BrooksGelmanConvergence, typeof(BAT.nop_func)}, context::BATContext{Float64, Random123.Philox4x{UInt64, 10}, HeterogeneousComputing.CPUnit, BAT._NoADSelected}) @ BAT ~/work/BAT.jl/BAT.jl/src/samplers/mcmc/mcmc_sample.jl:81 [3] bat_sample(target::PosteriorMeasure{DensityInterface.LogFuncDensity{Main.__atexample__named__tutorial.var"#3#4"{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{Int64}, typeof(Main.__atexample__named__tutorial.fit_function)}}, BAT.BATDistMeasure{ValueShapes.NamedTupleDist{(:a, :mu, :sigma), Tuple{Distributions.Product{Distributions.Continuous, Distributions.Weibull{Float64}, Vector{Distributions.Weibull{Float64}}}, Distributions.Product{Distributions.Continuous, Distributions.Uniform{Float64}, Vector{Distributions.Uniform{Float64}}}, Distributions.Weibull{Float64}}, Tuple{ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ScalarShape{Real}}}, NamedTuple}}}, algorithm::MCMCSampling{PriorToGaussian, MCMCChainPoolInit, MCMCMultiCycleBurnin, BrooksGelmanConvergence, typeof(BAT.nop_func)}, context::BATContext{Float64, Random123.Philox4x{UInt64, 10}, HeterogeneousComputing.CPUnit, BAT._NoADSelected}) @ BAT ~/work/BAT.jl/BAT.jl/src/algotypes/sampling_algorithm.jl:56 [4] bat_sample(target::PosteriorMeasure{DensityInterface.LogFuncDensity{Main.__atexample__named__tutorial.var"#3#4"{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{Int64}, typeof(Main.__atexample__named__tutorial.fit_function)}}, BAT.BATDistMeasure{ValueShapes.NamedTupleDist{(:a, :mu, :sigma), Tuple{Distributions.Product{Distributions.Continuous, Distributions.Weibull{Float64}, Vector{Distributions.Weibull{Float64}}}, Distributions.Product{Distributions.Continuous, Distributions.Uniform{Float64}, Vector{Distributions.Uniform{Float64}}}, Distributions.Weibull{Float64}}, Tuple{ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ScalarShape{Real}}}, NamedTuple}}}, algorithm::MCMCSampling{PriorToGaussian, MCMCChainPoolInit, MCMCMultiCycleBurnin, BrooksGelmanConvergence, typeof(BAT.nop_func)}) @ BAT ~/wo

failed to run `@example` block in src/tutorial.md:259-264 ```@example tutorial println("Truth: $true_par_values") println("Mode: $(mode(samples))") println("Mean: $(mean(samples))") println("Stddev: $(std(samples))") ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:261 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:269-271 ```@example tutorial unshaped_samples, f_flatten = bat_transform(Vector, samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:270 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:278-281 ```@example tutorial par_cov = cov(unshaped_samples) println("Covariance: $par_cov") ``` exception = UndefVarError: `unshaped_samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:279 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:285-287 ```@example tutorial bat_report(samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:286 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:296-304 ```@example tutorial plot( samples, :(mu[1]), mean = true, std = true, globalmode = true, marginalmode = true, nbins = 50, title = "Marginalized Distribution for mu[1]" ) savefig("tutorial-single-par.pdf") savefig("tutorial-single-par.svg"); nothing # hide ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:297 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:312-321 ```@example tutorial plot( samples, (:(mu[1]), :sigma), mean = true, std = true, globalmode = true, marginalmode = true, nbins = 50, title = "Marginalized Distribution for mu[1] and sigma" ) plot!(BAT.MCMCBasicStats(samples), (3, 5)) savefig("tutorial-param-pair.png") savefig("tutorial-param-pair.svg"); nothing # hide ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:313 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:328-336 ```@example tutorial plot( samples, mean = false, std = false, globalmode = true, marginalmode = false, nbins = 50 ) savefig("tutorial-all-params.png") savefig("tutorial-all-params.svg"); nothing # hide ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:329 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752