Fix test7: test_coverage

bc3LC · Dec 13, 2023 · 15b1823 · 15b1823
1 parent 9ad36c7
commit 15b1823
Showing 1 changed file with 34 additions and 28 deletions.
diff --git a/.github/workflows/test_coverage.yml b/.github/workflows/test_coverage.yml
@@ -6,44 +6,50 @@ on:
       - gcam-v7.0
 
 jobs:
-  test-coverage:
+  test:
     runs-on: ubuntu-latest
+
     env:
-      GITHUB_PAT: ${{ secrets.GH_GCAMREPORT_TOKEN }}
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      GITHUB_PAT: ${{secrets.GH_GCAMREPORT_TOKEN}}
 
     steps:
-      - uses: actions/checkout@v3
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
+      - uses: actions/checkout@v2
+      - uses: r-lib/actions/setup-r@v2-branch
         with:
-          use-public-rspm: true
+          r-version: '4.1.0'
+      - uses: r-lib/actions/setup-pandoc@v2-branch
+      - uses: r-lib/actions/setup-tinytex@v2-branch
+      - uses: actions/download-artifact@v2
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
+      - name: Cache R packages
+        uses: actions/cache@v1
         with:
-          extra-packages: any::covr
-          needs: coverage
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Test coverage
+      - name: Ubuntu config
         run: |
-          covr::codecov(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
-          )
-        shell: Rscript {0}
+          sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable
+          sudo apt-get update
+          sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev
 
-      - name: Show testthat output
-        if: always()
+      - name: Install dependencies
         run: |
-          ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
+          install.packages(c("remotes","rcmdcheck","covr"), repos = "https://cloud.r-project.org")
+          remotes::install_github("JGCRI/rpackageutils")
+          remotes::install_deps(dependencies = TRUE)
+        shell: Rscript {0}
+
+      # - name: Test coverage
+      #   run: |
+      #     cov <- covr::package_coverage()
+      #     covr:::report(cov, file = "coverage.xml")
+      #   shell: Rscript {0}
 
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v3
+      - uses: codecov/codecov-action@v3
         with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
+          # token: ${{secrets.CODECOV_TOKEN}}
+          files: ./coverage.xml
+          verbose: true