Update test coverage

bc3LC · May 21, 2024 · 1dd42f1 · 1dd42f1
1 parent 8f6c3c2
commit 1dd42f1
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Showing 2 changed files with 21 additions and 19 deletions.
diff --git a/.github/workflows/test_coverage.yml b/.github/workflows/test_coverage.yml
@@ -7,50 +7,52 @@ on:
       - dev
 
 jobs:
-  test:
-    runs-on: ubuntu-latest
+  R-CMD:
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+        - { os: ubuntu-latest, r: 'devel', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       GITHUB_PAT: ${{secrets.GH_GCAMREPORT_TOKEN}}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v1
       - uses: r-lib/actions/setup-r@v2-branch
         with:
-          r-version: '4.1.0'
+          r-version: '3.6'
       - uses: r-lib/actions/setup-pandoc@v2-branch
       - uses: r-lib/actions/setup-tinytex@v2-branch
-      - uses: actions/download-artifact@v2
-
-      - name: Cache R packages
-        uses: actions/cache@v1
-        with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Ubuntu config
+      - name: Install libraries
+        if: startsWith(matrix.config.os, 'ubuntu')
         run: |
           sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable
           sudo apt-get update
-          sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev
+          sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev libharfbuzz-dev libfribidi-dev
 
       - name: Install dependencies
         run: |
-          install.packages(c("remotes","rcmdcheck","covr"), repos = "https://cloud.r-project.org")
-          remotes::install_github("JGCRI/rpackageutils")
+          install.packages(c("remotes","rcmdcheck"), repos = "https://cloud.r-project.org")
           remotes::install_deps(dependencies = TRUE)
+          remotes::install_github("JGCRI/rpackageutils")
         shell: Rscript {0}
 
       # - name: Test coverage
       #   run: |
+      #     install.packages(c("DT","htmltools","covr"), repos = "https://cloud.r-project.org")
+      #     remotes::install_deps(dependencies = TRUE)
       #     cov <- covr::package_coverage()
       #     covr:::report(cov, file = "coverage.xml")
       #   shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v3
+      - uses: codecov/codecov-action@v4.0.1
         with:
-          # token: ${{secrets.CODECOV_TOKEN}}
+          token: ${{secrets.CODECOV_TOKEN}}
           files: ./coverage.xml
           verbose: true
diff --git a/coverage.xml b/coverage.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE coverage SYSTEM "https://raw.githubusercontent.com/cobertura/cobertura/master/cobertura/src/site/htdocs/xml/coverage-04.dtd">
-<coverage line-rate="0.920339883165162" branch-rate="0" lines-covered="1733" lines-valid="1883" branches-covered="0" branches-valid="0" complexity="0" version="3.6.2" timestamp="2024-05-17 14:08:12">
+<coverage line-rate="0.920339883165162" branch-rate="0" lines-covered="1733" lines-valid="1883" branches-covered="0" branches-valid="0" complexity="0" version="3.6.2" timestamp="2024-05-21 09:26:23">
   <sources>
     <source>C:/Users/claudia.rodes/Documents/IAM_COMPACT/gcamreport</source>
   </sources>