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Update coverage v1
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klau506 committed May 17, 2024
1 parent 9526d40 commit f0b5563
Showing 1 changed file with 22 additions and 22 deletions.
44 changes: 22 additions & 22 deletions .github/workflows/test_coverage.yml
Original file line number Diff line number Diff line change
Expand Up @@ -7,50 +7,50 @@ on:
- dev

jobs:
test:
runs-on: ubuntu-latest
R-CMD:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- { os: ubuntu-latest, r: 'devel', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{secrets.GH_GCAMREPORT_TOKEN}}

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v1
- uses: r-lib/actions/setup-r@v2-branch
with:
r-version: '4.1.0'
r-version: '3.6'
- uses: r-lib/actions/setup-pandoc@v2-branch
- uses: r-lib/actions/setup-tinytex@v2-branch
- uses: actions/download-artifact@v2

- name: Cache R packages
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Ubuntu config
- name: Install libraries
if: startsWith(matrix.config.os, 'ubuntu')
run: |
sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable
sudo apt-get update
sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev
sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev libharfbuzz-dev libfribidi-dev
- name: Install dependencies
run: |
install.packages(c("remotes","rcmdcheck","covr"), repos = "https://cloud.r-project.org")
remotes::install_github("JGCRI/rpackageutils")
install.packages(c("remotes","rcmdcheck"), repos = "https://cloud.r-project.org")
remotes::install_deps(dependencies = TRUE)
remotes::install_github("JGCRI/rpackageutils")
shell: Rscript {0}

# - name: Test coverage
# run: |
# cov <- covr::package_coverage()
# covr:::report(cov, file = "coverage.xml")
# shell: Rscript {0}
- name: Test coverage
run: |
cov <- covr::package_coverage()
covr:::report(cov, file = "coverage.xml")
shell: Rscript {0}

- uses: codecov/[email protected]
with:
# token: ${{secrets.CODECOV_TOKEN}}
token: ${{secrets.CODECOV_TOKEN}}
files: ./coverage.xml
verbose: true

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