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Fix bug where XLSX parses dates into floating point numbers #564

Merged
merged 14 commits into from
Oct 5, 2021
19 changes: 1 addition & 18 deletions api/src/paths/dwc/scrape-occurrences.ts
Original file line number Diff line number Diff line change
Expand Up @@ -8,8 +8,6 @@ import { getSubmissionFileFromS3, getSubmissionS3Key, prepDWCArchive } from './v
import { HTTP400 } from '../../errors/CustomError';
import { postOccurrenceSQL } from '../../queries/occurrence/occurrence-create-queries';
import { PostOccurrence } from '../../models/occurrence-create';
import xlsx from 'xlsx';
import moment from 'moment';

const defaultLog = getLogger('paths/dwc/scrape-occurrences');

Expand Down Expand Up @@ -114,9 +112,7 @@ export function scrapeAndUploadOccurrences(): RequestHandler {

eventRows?.forEach((eventRow: any) => {
if (eventRow[eventEventIdHeader] === occurrenceEventId) {
const eventMoment = convertExcelDateToMoment(eventRow[eventDateHeader] as number);
eventDate = eventMoment.toISOString();

eventDate = eventRow[eventDateHeader];
verbatimCoordinates = eventRow[eventVerbatimCoordinatesHeader];
}
});
Expand Down Expand Up @@ -184,19 +180,6 @@ export const uploadScrapedOccurrence = async (
}
};

export const convertExcelDateToMoment = (excelDateNumber: number): moment.Moment => {
const ssfDate = xlsx.SSF.parse_date_code(excelDateNumber);

return moment({
year: ssfDate.y,
month: ssfDate.m,
day: ssfDate.d,
hour: ssfDate.H,
minute: ssfDate.M,
second: ssfDate.S
});
};

const getHeadersAndRowsFromFile = (file: any) => {
const eventHeaders = file.worksheets.event?.getHeaders();
const eventRows = file.worksheets.event?.getRows();
Expand Down
54 changes: 50 additions & 4 deletions api/src/utils/media/csv/csv-file.ts
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,7 @@ export class CSVWorksheet {

_headers: string[];
_rows: (string | number)[][];
_rowObjects: object[];

csvValidation: CSVValidation;

Expand All @@ -36,6 +37,7 @@ export class CSVWorksheet {

this._headers = [];
this._rows = [];
this._rowObjects = [];

this.csvValidation = new CSVValidation(this.name);
}
Expand Down Expand Up @@ -102,12 +104,38 @@ export class CSVWorksheet {
}

if (!this._rows.length) {
const rowsToReturn: (string | number)[][] = [];

const originalRange = xlsx.utils.decode_range(ref);

// Specify range to not include the 0th row (header row)
const customRange: xlsx.Range = { ...originalRange, s: { ...originalRange.s, r: 1 } };
for (let i = 1; i <= originalRange.e.r; i++) {
const row = new Array(this.getHeaders().length);
let rowHasValues = false;

for (let j = 0; j <= originalRange.e.c; j++) {
const cellAddress = { c: j, r: i };
const cellRef = xlsx.utils.encode_cell(cellAddress);
const cellValue = this.worksheet[cellRef];

if (!cellValue) {
continue;
}

if (cellValue.t === 'n' || cellValue.t === 'd') {
row[j] = cellValue.w;
} else {
row[j] = cellValue.v;
}

this._rows = xlsx.utils.sheet_to_json(this.worksheet, { header: 1, blankrows: false, range: customRange });
rowHasValues = true;
}

if (row.length && rowHasValues) {
rowsToReturn.push(row);
}
}

this._rows = rowsToReturn;
}

return this._rows;
Expand All @@ -124,7 +152,25 @@ export class CSVWorksheet {
return [];
}

return xlsx.utils.sheet_to_json(this.worksheet);
if (!this._rowObjects.length) {
const rowObjectsArray: object[] = [];
const rows = this.getRows();
const headers = this.getHeaders();

rows.forEach((row: (string | number)[]) => {
const rowObject = {};

headers.forEach((header: string, index: number) => {
rowObject[header] = row[index];
});

rowObjectsArray.push(rowObject);
});

this._rowObjects = rowObjectsArray;
}

return this._rowObjects;
}

buildID(parts: (string | number)[], postfix?: string): string {
Expand Down
2 changes: 1 addition & 1 deletion app/src/components/map/OccurrenceFeaturePopup.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ export const OccurrenceFeaturePopup: React.FC<{ featureData: any }> = (props) =>
</div>
<div>
<b>Date</b>
{`: ${getFormattedDate(DATE_FORMAT.ShortMediumDateTimeFormat, featureData.eventDate)}`}
{`: ${getFormattedDate(DATE_FORMAT.ShortMediumDateFormat2, featureData.eventDate)}`}
</div>
</Popup>
);
Expand Down