Merge pull request #356 from ypriverol/dev

sdrf-pipelines 0.0.24 -> 0.0.25
bigbio · Feb 28, 2024 · 43418a1 · 43418a1
2 parents ade8c07 + 4bbee85
commit 43418a1
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Showing 4 changed files with 10 additions and 10 deletions.
diff --git a/modules/local/pmultiqc/main.nf b/modules/local/pmultiqc/main.nf
@@ -3,7 +3,7 @@ process PMULTIQC {
 
     conda "conda-forge::pandas_schema conda-forge::lzstring bioconda::pmultiqc=0.0.24"
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/pmultiqc:0.0.24--pyhdfd78af_0"
+        container "https://depot.galaxyproject.org/singularity/pmultiqc:0.0.25--pyhdfd78af_0"
     } else {
         container "biocontainers/pmultiqc:0.0.24--pyhdfd78af_0"
     }

diff --git a/modules/local/preprocess_expdesign.nf b/modules/local/preprocess_expdesign.nf
@@ -6,11 +6,11 @@ process PREPROCESS_EXPDESIGN {
     tag "$design.Name"
     label 'process_low'
 
-    conda "bioconda::sdrf-pipelines=0.0.24"
+    conda "bioconda::sdrf-pipelines=0.0.25"
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.24--pyhdfd78af_0"
+        container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.25--pyhdfd78af_0"
     } else {
-        container "biocontainers/sdrf-pipelines:0.0.24--pyhdfd78af_0"
+        container "biocontainers/sdrf-pipelines:0.0.25--pyhdfd78af_0"
     }
 
     input:

diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf
@@ -3,11 +3,11 @@ process SAMPLESHEET_CHECK {
     tag "$input_file"
     label 'process_single'
 
-    conda "bioconda::sdrf-pipelines=0.0.24"
+    conda "bioconda::sdrf-pipelines=0.0.25"
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.24--pyhdfd78af_0"
+        container "https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.25--pyhdfd78af_0"
     } else {
-        container "biocontainers/sdrf-pipelines:0.0.24--pyhdfd78af_0"
+        container "biocontainers/sdrf-pipelines:0.0.25--pyhdfd78af_0"
     }
 
     input:

diff --git a/modules/local/sdrfparsing/main.nf b/modules/local/sdrfparsing/main.nf
@@ -2,10 +2,10 @@ process SDRFPARSING {
     tag "$sdrf.Name"
     label 'process_low'
 
-    conda "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.24"
+    conda "conda-forge::pandas_schema bioconda::sdrf-pipelines=0.0.25"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.24--pyhdfd78af_0' :
-        'biocontainers/sdrf-pipelines:0.0.24--pyhdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/sdrf-pipelines:0.0.25--pyhdfd78af_0' :
+        'biocontainers/sdrf-pipelines:0.0.25--pyhdfd78af_0' }"
 
     input:
     path sdrf