diann 1.8.1 -> 1.9.1dev

.github/workflows/ci.yml

@@ -70,31 +70,11 @@ jobs:
           echo $'channels:\n  - conda-forge\n  - bioconda\n  - defaults\nuse_lockfiles: false' >> ~/.mambarc
       - name: Install Singularity
         if: matrix.exec_profile == 'singularity'
-        run: |
-          sudo apt-get update && \
-          sudo apt-get install -y \
-            autoconf \
-            automake \
-            cryptsetup \
-            fuse \
-            fuse2fs \
-            libfuse-dev \
-            libglib2.0-dev \
-            libseccomp-dev \
-            libtool \
-            pkg-config \
-            runc \
-            squashfs-tools \
-            squashfs-tools-ng \
-            uidmap \
-            zlib1g-dev
-          sudo rm -rf /usr/local/go
-          wget -qO- https://go.dev/dl/go1.22.5.linux-amd64.tar.gz
-          sudo tar -C /usr/local -xzf go1.22.5.linux-amd64.tar.gz
-          echo 'export PATH=/usr/local/go/bin:$PATH' >> ~/.bashrc && \
-          source ~/.bashrc
-          wget -qO- https://github.com/sylabs/singularity/releases/download/v4.1.4/singularity-ce_4.1.4-jammy_amd64.deb
-          sudo apt install ./singularity-ce_4.1.4-jammy_amd64.deb
+        steps:
+          - name: Checkout Repository
+            uses: actions/checkout@v3
+          - name: Singularity install with defaults
+            uses: singularityhub/install-singularity@main
       - name: Run pipeline with test data in docker profile
         if: matrix.exec_profile == 'docker'
         # TODO nf-core: You can customise CI pipeline run tests as required