Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement lof removes more than 10% of protein for strucvars #203

Merged

Conversation

gromdimon
Copy link
Collaborator

Issue:

Description:

  • Implement
  • Test

@gromdimon gromdimon force-pushed the 50-implement-_lof_is_frequent_in_population-for-strucvars branch from 21081da to 2aa877b Compare September 9, 2024 13:10
Copy link

codecov bot commented Sep 9, 2024

Codecov Report

Attention: Patch coverage is 98.38710% with 1 line in your changes missing coverage. Please review.

Project coverage is 86.67%. Comparing base (ed94872) to head (6bdccdb).
Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
src/strucvar/auto_pvs1.py 98.24% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #203      +/-   ##
==========================================
+ Coverage   86.53%   86.67%   +0.13%     
==========================================
  Files          65       65              
  Lines        5569     5627      +58     
==========================================
+ Hits         4819     4877      +58     
  Misses        750      750              
Files with missing lines Coverage Δ
src/auto_acmg.py 61.41% <100.00%> (+0.42%) ⬆️
src/defs/auto_acmg.py 99.64% <100.00%> (+<0.01%) ⬆️
src/defs/mehari.py 100.00% <100.00%> (ø)
src/strucvar/auto_pvs1.py 95.00% <98.24%> (+1.62%) ⬆️

@gromdimon gromdimon changed the title Implement lof is frequent in population for strucvars Implement lof removes more than 10% of protein for strucvars Sep 9, 2024
@gromdimon gromdimon merged commit 1500123 into main Sep 9, 2024
4 checks passed
@gromdimon gromdimon deleted the 50-implement-_lof_is_frequent_in_population-for-strucvars branch September 9, 2024 13:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Implement _lof_is_frequent_in_population for StrucVars
1 participant