Apply fix to bash script to detect correct JAVA_HOME (#13387)

* Apply fix to bash script to detect correct JAVA_HOME Thanks to @chapmanb for pointing to b726965 Thanks to @keenhl for spotting the issue * ADd zlib to meta.yaml
bioconda · Jan 28, 2019 · 7b80e90 · 7b80e90
1 parent 649b0b0
commit 7b80e90
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/recipes/seqbuster/meta.yaml b/recipes/seqbuster/meta.yaml
@@ -12,12 +12,13 @@ source:
   sha256: 16419d453fd56bd6eb9164be4353a71c5859fac85a9f165edf73a0bf1048d505
 
 build:
-  number: 0
+  number: 1
   skip: True # [osx]
 
 requirements:
   run:
     - openjdk >=8
+    - zlib
 
 test:
   commands:

diff --git a/recipes/seqbuster/miraligner.sh b/recipes/seqbuster/miraligner.sh
@@ -18,7 +18,7 @@ JAR_DIR=$DIR
 
 java=java
 
-if [ -z "${JAVA_HOME:=}" ]; then
+if [ -n "${JAVA_HOME:=}" ]; then
   if [ -e "$JAVA_HOME/bin/java" ]; then
       java="$JAVA_HOME/bin/java"
   fi