Add oligomap software package

[deliaBlue]

Add oligomap software package to Bioconda.
Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases. It allows to exhaustively identify all the perfect and 1-error (where an error is defined to be a mismatch, insertion or deletion) matches of large sets of small RNAs to target sequences.

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[deliaBlue]

Hey @bgruening,

I've been working on the recipe for the Zavolanlab oligomap software package and, even if it passes the lint and Linux tests, it does not pass the OS X one. I am not a Mac user and I do not have the experience enough to find the correct lines to fix the problem.
From the output error (see below) I cannot infer what could be the problem. I'm not sure if it is a problem with the dependencies or the commands to build the package or even the commands in the CMakeLists.txt (which can be found in the oligomap repository).
I would much appreciate if you could give me some advice or guidance on this issue. If you need any extra data, list it and I will provide it.

Error log:

16:06:46 BIOCONDA ERROR COMMAND FAILED (exited with 1): /opt/mambaforge/envs/bioconda/bin/conda mambabuild --override-channels --no-anaconda-upload -c conda-forge -c bioconda -c defaults -e /opt/mambaforge/envs/bioconda/conda_build_config.yaml -e /opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/bioconda_utils-conda_build_config.yaml recipes/oligomap/meta.yaml
16:06:46 BIOCONDA ERROR STDOUT+STDERR:
/opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/conda_build/cli/main_build.py:390: UserWarning: RECIPE_PATH received is a file (recipes/oligomap/meta.yaml).
It should be a path to a folder.
Forcing conda-build to use the recipe file.
  warnings.warn(
No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.21
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.21
Updating build index: /opt/mambaforge/envs/bioconda/conda-bld

INFO:conda_build.variants:Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from /opt/mambaforge/envs/bioconda/conda_build_config.yaml
Adding in variants from internal_defaults
Adding in variants from /opt/mambaforge/envs/bioconda/conda_build_config.yaml
INFO:conda_build.variants:Adding in variants from /opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/bioconda_utils-conda_build_config.yaml
Adding in variants from /opt/mambaforge/envs/bioconda/lib/python3.8/site-packages/bioconda_utils/bioconda_utils-conda_build_config.yaml
    entry = lookup_dict[get_url_from_channel(c)]
KeyError: 'https://conda.anaconda.org/conda-forge'

16:06:46 BIOCONDA ERROR BUILD FAILED recipes/oligomap

Many thanks!

[kbseah]

this was an issue affecting many PRs (#41526), should be fixed now, let's see if all the tests pass

[kbseah]

@deliaBlue, looks good to me. if ready for a review please ask BiocondaBot to add the label. thanks for your contribution!

[deliaBlue]

@bioconda-bot please add label

[bgruening]

@deliaBlue you are already shipping the LICENSE files with your tarball. It should work without including the file in this repo.

[bgruening]

Thanks a lot for your contribution!