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Update lotus2 to 2.28 #41675

Merged
merged 4 commits into from
Oct 2, 2023
Merged

Update lotus2 to 2.28 #41675

merged 4 commits into from
Oct 2, 2023

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BiocondaBot
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@BiocondaBot BiocondaBot commented Jun 25, 2023

Update lotus2: 2.252.28

install with bioconda Conda

Info Link or Description
Recipe recipes/lotus2 (click to view/edit other files)
Summary LotuS2 is a lightweight complete 16S/18S/ITS pipeline
Home http://lotus2.earlham.ac.uk/
Releases https://github.com/hildebra/lotus2/tags
Author @hildebra

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Jun 25, 2023
@nsoranzo
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Depends on #41669 .

@nsoranzo nsoranzo force-pushed the bump/lotus2 branch 2 times, most recently from 09cafc5 to dc411de Compare June 30, 2023 23:17
@nsoranzo
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nsoranzo commented Jul 6, 2023

@bioconda/core I am having issues with this recipe update, the Linux build fails and by looking at the Azure job run logs I think the error happens at the container creation stage and is probably:

ERRO Task processing failed: API error (500): {"message":"ApplyLayer exit status 1 stdout: stderr: write /usr/local/share/rdp_classifier-2.13-1/classifier.jar: no space left on device"}

The containers for previous versions were built and uploaded fine, although the lotus2 package installs a number of databases using post-link.sh .
Any suggestion?
Thanks a lot!

@nsoranzo nsoranzo force-pushed the bump/lotus2 branch 6 times, most recently from 46ce221 to e59a12f Compare August 2, 2023 11:31
@dpryan79
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No space left on device

@BiocondaBot BiocondaBot changed the title Update lotus2 to 2.26 Update lotus2 to 2.27 Sep 5, 2023
@BiocondaBot BiocondaBot changed the title Update lotus2 to 2.27 Update lotus2 to 2.28 Sep 8, 2023
@nsoranzo nsoranzo force-pushed the bump/lotus2 branch 3 times, most recently from 8c48b65 to 93e2e96 Compare October 2, 2023 12:48
@nsoranzo nsoranzo merged commit 8e5447b into master Oct 2, 2023
@nsoranzo nsoranzo deleted the bump/lotus2 branch October 2, 2023 15:15
nsoranzo added a commit to nsoranzo/earlham-galaxytools that referenced this pull request Nov 9, 2023
Add check that the DB directory is present, due to the changes
introduced in bioconda/bioconda-recipes#41675 .

Update test data.
nsoranzo added a commit to nsoranzo/earlham-galaxytools that referenced this pull request Nov 10, 2023
Add check that the DB directory is present, due to the changes
introduced in bioconda/bioconda-recipes#41675 .

Update test data.
nsoranzo added a commit to nsoranzo/earlham-galaxytools that referenced this pull request Nov 10, 2023
Add check that the DB directory is present, due to the changes
introduced in bioconda/bioconda-recipes#41675 .

Update test data.
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3 participants