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Update kallisto to 0.50.0 #41699

Merged
merged 6 commits into from
Jul 6, 2023
Merged

Update kallisto to 0.50.0 #41699

merged 6 commits into from
Jul 6, 2023

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@BiocondaBot BiocondaBot commented Jun 27, 2023

Update kallisto: 0.48.00.50.0

install with bioconda Conda

Info Link or Description
Recipe recipes/kallisto (click to view/edit other files)
Summary Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
Home http://pachterlab.github.io/kallisto
Releases https://github.com/pachterlab/kallisto/tags
Recipe Maintainer(s) @mjsteinbaugh
Author @pachterlab

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Jun 27, 2023
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This is currently a pre-release version, do not merge yet

@mjsteinbaugh mjsteinbaugh self-requested a review June 27, 2023 12:18
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We may need to adjust the build script for bifrost:
pachterlab/kallisto#385

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Now hitting this autoconf issue:

configure.ac: error: required file 'config.sub' not found
configure.ac: error: required file 'config.guess' not found
configure.ac: error: required file 'install-sh' not found
configure.ac:   try running autoreconf --install

@mjsteinbaugh mjsteinbaugh self-assigned this Jun 28, 2023
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Adding in support for bzip2 and xz compression

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Another victim of #41526 on macOS

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@pmelsted OK to merge kallisto 0.50.0 or would you prefer that we hold off?

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Looks officially released to me, so surely OK to merge?

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@cbrueffer Thanks you're right, the tag changed from prerelease to release. Safe to merge.

@mjsteinbaugh mjsteinbaugh merged commit bd9e3c4 into master Jul 6, 2023
@mjsteinbaugh mjsteinbaugh deleted the bump/kallisto branch July 6, 2023 11:18
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Ah, now I understand the initial question! :-)

tmaklin pushed a commit to tmaklin/bioconda-recipes that referenced this pull request Jul 8, 2023
* Update kallisto to 0.50.0

* Update meta

* Attempt to update build recipe

* Include bzip2 and xz for compression handling

---------

Co-authored-by: Michael Steinbaugh <[email protected]>
Co-authored-by: Johannes Köster <[email protected]>
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4 participants