[BUG] Bug fix to use trim command

biocore · Jan 10, 2019 · ca5a72b · ca5a72b
1 parent 4b4badc
commit ca5a72b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/deblur b/scripts/deblur
@@ -137,7 +137,7 @@ def trim(seqs_fp, output_fp, trim_length, log_level, log_file):
     logger = logging.getLogger(__name__)
     logger.info('deblur deblur_seqs started on file %s' % seqs_fp)
     with open(output_fp, 'w') as out_f:
-        for label, seq in trim_seqs(sequence_generator(seqs_fp), trim_length):
+        for label, seq in trim_seqs(sequence_generator(seqs_fp), trim_length, 0):
             out_f.write(">%s\n%s\n" % (label, seq))