Skip to content

Issues: biocore/metagenomics_pooling_notebook

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

57 Open 41 Closed
57 Open 41 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Display dilution regression and dilution factor scatter plot for tellseq
#279 opened Jan 16, 2025 by AmandaBirmingham
Support arbitrary number of dilutions for calculating input DNA volume in tellseq
#278 opened Jan 16, 2025 by AmandaBirmingham
Split pre-amplification steps from post-amplification ones in tellseq notebook so history isn't overwritten
#277 opened Jan 16, 2025 by AmandaBirmingham
Store tellseq sample sheets with .csv extension, not .txt
#275 opened Jan 14, 2025 by AmandaBirmingham
Centralize or copy shared current metaG matrix tube functionality into amplicon notebook
#274 opened Jan 13, 2025 by AmandaBirmingham
Centralize or copy shared current metaG matrix tube functionality into metaT notebook
#273 opened Jan 13, 2025 by AmandaBirmingham
Change error to strong warning for duplicate sample names in sample accession files for matrix tube notebook?
#272 opened Jan 13, 2025 by AmandaBirmingham
synDNA picklist should have all of column 1 of the LDV source plate listed (instead of only ‘A1’ would be ‘A1, B1, C1,…, P1’)
#270 opened Jan 11, 2025 by AmandaBirmingham
1
Plot in calculate_iseq_pooling_volumes() breaks if there is a Zero in read counts.
#266 opened Dec 19, 2024 by RodolfoSalido
@RodolfoSalido
4
TellSeq sheets missing HumanFiltering column in [Bioinformatics] section of sample-sheets.
#265 opened Dec 16, 2024 by charles-cowart
1
Cleanup CARRIED_PREP_COLUMNS
#263 opened Dec 10, 2024 by charles-cowart
2+ projects in sample-sheets cannot share the same qiita-id
#258 opened Dec 5, 2024 by charles-cowart
@charles-cowart
Replace seqpro binaries
#257 opened Dec 5, 2024 by charles-cowart
Ensure NPH_calc_df_SLURRY.ipynb always pulls the latest abs_quant_sample_info_calc.yml from github
#247 opened Nov 7, 2024 by AmandaBirmingham
add support for pooling file generation from multiple library plates enhancement New feature or request
#242 opened Oct 9, 2024 by RodolfoSalido
@RodolfoSalido
2
Catch spaces in project name/abbreviation
#240 opened Oct 7, 2024 by cbrenchy
5
sample-sheets w/positive controls are fully descriptive
#238 opened Sep 23, 2024 by charles-cowart
2
Possibly Merge v101 and v102 spreadsheets
#237 opened Aug 31, 2024 by charles-cowart
Refactor use of strict parameter on sample_sheet.make_sample_sheet()
#236 opened Aug 30, 2024 by AmandaBirmingham
1
Newer sample-sheet types may not need a remapper.
#235 opened Aug 30, 2024 by charles-cowart
Centralize constants defining sequencers
#234 opened Aug 30, 2024 by AmandaBirmingham
Refactor sections property of KLSampleSheet to reduce confusion with _sections property of parent class
#233 opened Aug 30, 2024 by AmandaBirmingham
2
merge_read_counts() function should have a robust regex expression for matching sample_names to filenames.
#222 opened Jul 30, 2024 by RodolfoSalido
Consider refactoring KLSampleSheet class to use ABC module
#221 opened Jul 29, 2024 by charles-cowart
@charles-cowart
Improve logging support for metapool
#220 opened Jul 29, 2024 by charles-cowart
@charles-cowart
ProTip! Updated in the last three days: updated:>2025-01-30.