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EMPress integration, addressing pandas FutureWarning, minor changes/additions to code documentation and variable names #45

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merged 7 commits into from
Jul 3, 2023

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yangchen2
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Addressing this FutureWarning from Pandas:

utils.py:53: FutureWarning: The default value of numeric_only in DataFrameGroupBy.sum is deprecated. In a future version, numeric_only will default to False. Either specify numeric_only or select only columns which should be valid for the function.
gb = joint_df.groupby(factor_name).sum()

See documentation updates: https://pandas.pydata.org/docs/whatsnew/v1.5.0.html

@yangchen2 yangchen2 changed the title utils.py:53: FutureWarning: The default value of numeric_only in Data… EMPress integration, addressing pandas FutureWarning, minor changes/additions to code documentation and variable names Jun 29, 2023
@gibsramen gibsramen merged commit 3a65990 into biocore:main Jul 3, 2023
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