@bioimageiobot, please upload resourceful-lizard #26
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| on: | |
| issues: | |
| types: | |
| - opened | |
| - reopened | |
| permissions: | |
| issues: write # Allow the workflow to update the opened issue | |
| jobs: | |
| comment: | |
| if: startsWith(github.event.issue.title, '@bioimageiobot, please upload') | |
| outputs: | |
| package_url: ${{steps.analyse-body.outputs.package_url}} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - id: analyse-body | |
| shell: python | |
| run: | | |
| import os | |
| import uuid | |
| body = os.environ["BODY"] | |
| expected_start = "### Temporary Public Download URL\n\n" | |
| expected_end = """ | |
| ### Terms of Service | |
| - [x] I confirm that I have read and agree to bioimage.io's [Terms of Service](https://bioimage.io/docs/#/terms_of_service)""" | |
| if body.startswith(expected_start) and body.endswith(expected_end): | |
| package_url = body[len(expected_start):-len(expected_end)].strip() | |
| if not package_url or not package_url.startswith("https://"): | |
| msg = f"I was expecting to find an https URL to a ZIP-file containing a packaged bioimage.io description, but I found '{package_url}'." | |
| package_url = "" | |
| else: | |
| msg = f"Started [workflow run](${{github.server_url}}/${{github.repository}}/actions/runs/${{github.run_id}}) to upload '{package_url}' to the bioimage.io collection." | |
| else: | |
| msg = f"Expected issue to follow the '@bioimageiobot, please upload' issue template with a checked Terms of Service checkbox.\nPlease create a new issue if you do want to upload a bioimage.io package. Thank you! :pray:" | |
| package_url = "" | |
| def set_output(name, value): | |
| """adapted from https://github.com/orgs/community/discussions/28146#discussioncomment-5638014""" | |
| with open(os.environ['GITHUB_OUTPUT'], 'a') as fh: | |
| delimiter = uuid.uuid1() | |
| print(f'{name}<<{delimiter}', file=fh) | |
| print(value, file=fh) | |
| print(delimiter, file=fh) | |
| set_output("message", msg) | |
| set_output("package_url", package_url) | |
| env: | |
| BODY: ${{github.event.issue.body}} | |
| - run: gh issue comment "$NUMBER" --body "$MESSAGE" | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GH_REPO: ${{ github.repository }} | |
| NUMBER: ${{ github.event.issue.number }} | |
| MESSAGE: ${{steps.analyse-body.outputs.message}} | |
| stage: | |
| needs: comment | |
| if: needs.comment.outputs.package_url != '' | |
| uses: bioimage-io/collection/.github/workflows/stage_call.yaml@main | |
| with: | |
| package_url: ${{needs.comment.outputs.package_url}} | |
| environment_name: production | |
| bioimageio_user_id: ${{format('github|{0}', github.event.issue.user.id)}} | |
| secrets: inherit | |
| report: | |
| needs: [comment, stage] | |
| if: startsWith(github.event.issue.title, '@bioimageiobot, please upload') && always() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - if: needs.stage.result != 'success' | |
| run: gh issue comment "$NUMBER" --body "$MESSAGE" | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GH_REPO: ${{ github.repository }} | |
| NUMBER: ${{ github.event.issue.number }} | |
| MESSAGE: | | |
| Unfortunately an error occurred, see stage job in [workflow run](${{github.server_url}}/${{github.repository}}/actions/runs/${{github.run_id}}). | |
| bioimage.io @reviewers were notified. | |
| - if: needs.stage.result == 'success' | |
| run: | | |
| gh issue close "$NUMBER" --reason=completed --comment="$MESSAGE" | |
| gh issue edit "$NUMBER" --title="$TITLE" | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GH_REPO: ${{ github.repository }} | |
| NUMBER: ${{ github.event.issue.number }} | |
| MESSAGE: | | |
| Successfully staged new draft '${{needs.stage.outputs.concept_id}}' from ${{needs.comment.outputs.package_url}} ! :rocket: | |
| Status and test results of your upload can be found [here](https://bioimageio-uploader.netlify.app/#/status/${{needs.stage.outputs.concept_id}}). | |
| TITLE: "@bioimageiobot, please upload ${{needs.stage.outputs.concept_id}}" | |
| test: | |
| needs: stage | |
| uses: bioimage-io/collection/.github/workflows/test_call.yaml@main | |
| with: | |
| concept_id: ${{needs.stage.outputs.concept_id}} | |
| version: 'draft' | |
| environment_name: 'production' | |
| issue-nr: ${{github.event.issue.number}} | |
| secrets: inherit |