Black 2024

scripts/add_mesh_xrefs_to_doid_owl.py

@@ -2,6 +2,7 @@
 
 These are directly added to the version controlled DOID OWL file.
 """
+
 import csv
 
 import obonet

scripts/generate_cl_mesh_mappings.py

@@ -1,4 +1,5 @@
 """Generate mappings using Gilda from CL to MeSH."""
+
 import re
 
 import gilda

scripts/generate_doid_mesh_mappings.py

@@ -1,4 +1,5 @@
 """Generate mappings using Gilda from DOID to MeSH."""
+
 from collections import Counter
 
 import gilda

scripts/generate_hp_mesh_mappings.py

@@ -1,4 +1,5 @@
 """Generate mappings using Gilda from HPO to MeSH."""
+
 from collections import Counter
 
 import gilda

scripts/generate_mondo_mesh_mappings.py

@@ -1,4 +1,5 @@
 """Generate mappings using Gilda from MONDO to MeSH."""
+
 from collections import Counter
 
 import gilda

src/biomappings/export_sssom.py

@@ -157,15 +157,15 @@ def sssom():
 
     click.echo("Writing JSON")
     with JSON_PATH.open("w") as file:
-        msdf.metadata[
-            "mapping_set_id"
-        ] = "https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.json"
+        msdf.metadata["mapping_set_id"] = (
+            "https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.json"
+        )
         write_json(msdf, file)
     click.echo("Writing OWL")
     with OWL_PATH.open("w") as file:
-        msdf.metadata[
-            "mapping_set_id"
-        ] = "https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.owl"
+        msdf.metadata["mapping_set_id"] = (
+            "https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.owl"
+        )
         write_owl(msdf, file)