Add global switch for turning on ID checks (#201)

biopragmatics · Nov 4, 2024 · 667e922 · 667e922
1 parent 1df4f94
commit 667e922
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/src/pyobo/constants.py b/src/pyobo/constants.py
@@ -29,6 +29,7 @@
     "resid",  # deprecated
     "adw",  # deprecated
 }
+GLOBAL_CHECK_IDS = False
 
 #: Default prefix
 DEFAULT_PREFIX = "debio"

diff --git a/src/pyobo/struct/reference.py b/src/pyobo/struct/reference.py
@@ -8,6 +8,7 @@
 from pydantic import Field, field_validator, model_validator
 
 from .utils import obo_escape
+from ..constants import GLOBAL_CHECK_IDS
 from ..identifier_utils import normalize_curie
 
 __all__ = [
@@ -50,8 +51,8 @@ def validate_identifier(cls, values):  # noqa
             raise ExpansionError(f"Unknown prefix: {prefix}")
         values["prefix"] = resource.prefix
         values["identifier"] = resource.standardize_identifier(identifier)
-        # if not resource.is_valid_identifier(values["identifier"]):
-        #    raise ValueError(f"non-standard identifier: {resource.prefix}:{values['identifier']}")
+        if GLOBAL_CHECK_IDS and not resource.is_valid_identifier(values["identifier"]):
+            raise ValueError(f"non-standard identifier: {resource.prefix}:{values['identifier']}")
         return values
 
     @classmethod