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templates: add templates, not used for now
requires more dev review to decide whether to add to templateGroups
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21 changes: 21 additions & 0 deletions
21
data/templates/Chem-decreases-Gene/Chem-negatively_correlated-Gene.json
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| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories":["biolink:ChemicalEntity"] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:Gene", "biolink:Protein"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "creativeQueryObject", | ||
| "predicates": ["biolink:negatively_correlated_with"] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
21 changes: 21 additions & 0 deletions
21
data/templates/Chem-increases-Gene/Chem-positively_correlated-Gene.json
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|---|---|---|
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| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories":["biolink:ChemicalEntity"] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:Gene", "biolink:Protein"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "creativeQueryObject", | ||
| "predicates": ["biolink:positively_correlated_with"] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
33 changes: 33 additions & 0 deletions
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...Disease/Chem-interacts,correlated,associated-Gene-biomarker,associated_condition-DoP.json
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|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories":["biolink:ChemicalEntity"] | ||
| }, | ||
| "nA": { | ||
| "categories":["biolink:Gene"], | ||
| "is_set": true | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "nA", | ||
| "predicates": ["biolink:interacts_with", "biolink:correlated_with", "biolink:associated_with"] | ||
| }, | ||
| "eB": { | ||
| "subject": "nA", | ||
| "object": "creativeQueryObject", | ||
| "predicates": [ | ||
| "biolink:gene_associated_with_condition", | ||
| "biolink:biomarker_for" | ||
| ] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
33 changes: 33 additions & 0 deletions
33
data/templates/Drug-treats-Disease/Chem-treats-DoP-causes,part-DoP.json
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|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories":["biolink:ChemicalEntity"] | ||
| }, | ||
| "nA": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"], | ||
| "is_set": true | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "nA", | ||
| "predicates": ["biolink:treats"] | ||
| }, | ||
| "eB": { | ||
| "subject": "nA", | ||
| "object": "creativeQueryObject", | ||
| "predicates": [ | ||
| "biolink:part_of", | ||
| "biolink:causes" | ||
| ] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
33 changes: 33 additions & 0 deletions
33
data/templates/Drug-treats-Disease/Chem-treats-DoP-similar,part-DoP.json
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|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories":["biolink:ChemicalEntity"] | ||
| }, | ||
| "nA": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"], | ||
| "is_set": true | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "nA", | ||
| "predicates": ["biolink:treats"] | ||
| }, | ||
| "eB": { | ||
| "subject": "creativeQueryObject", | ||
| "object": "nA", | ||
| "predicates": [ | ||
| "biolink:similar_to", | ||
| "biolink:has_part" | ||
| ] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
35 changes: 35 additions & 0 deletions
35
data/templates/Drug-treats-Disease/ChemDecreasesLikelihood-Disease.json
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|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories": | ||
| ["ChemicalEntity"] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "creativeQueryObject", | ||
| "qualifier_constraints": [ | ||
| { | ||
| "qualifier_set": [ | ||
| { | ||
| "qualifier_type_id": "biolink:object_direction_qualifier", | ||
| "qualifier_value": "decreased" | ||
| }, | ||
| { | ||
| "qualifier_type_id": "biolink:object_aspect_qualifier", | ||
| "qualifier_value": "likelihood" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
22 changes: 22 additions & 0 deletions
22
data/templates/NonChem-treats-Disease/NonChem-treats-DoP.json
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| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories": | ||
| ["biolink:Procedure", "biolink:Treatment", "biolink:ClinicalIntervention"] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "creativeQueryObject", | ||
| "predicates": ["biolink:treats"] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
35 changes: 35 additions & 0 deletions
35
data/templates/NonChem-treats-Disease/Procedure-decreasesLikelihood-Disease.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories": | ||
| ["Procedure"] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "creativeQueryObject", | ||
| "qualifier_constraints": [ | ||
| { | ||
| "qualifier_set": [ | ||
| { | ||
| "qualifier_type_id": "biolink:object_direction_qualifier", | ||
| "qualifier_value": "decreased" | ||
| }, | ||
| { | ||
| "qualifier_type_id": "biolink:object_aspect_qualifier", | ||
| "qualifier_value": "likelihood" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |
21 changes: 21 additions & 0 deletions
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data/templates/NonChem-treats-Disease/Treatment-related_to-DoP.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| { | ||
| "message": { | ||
| "query_graph": { | ||
| "nodes": { | ||
| "creativeQuerySubject": { | ||
| "categories":["biolink:Treatment"] | ||
| }, | ||
| "creativeQueryObject": { | ||
| "categories":["biolink:DiseaseOrPhenotypicFeature"] | ||
| } | ||
| }, | ||
| "edges": { | ||
| "eA": { | ||
| "subject": "creativeQuerySubject", | ||
| "object": "creativeQueryObject", | ||
| "predicates": ["biolink:related_to"] | ||
| } | ||
| } | ||
| } | ||
| } | ||
| } |