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Update to NumPy 2.0 #227

Update to NumPy 2.0

Update to NumPy 2.0 #227

Triggered via pull request March 28, 2024 16:10
Status Failure
Total duration 2m 20s
Artifacts

test_and_deploy.yml

on: pull_request
Generate wheels matrix
22s
Build documentation
35s
Test interfaces to databases and applications
54s
Test interface to Muscle 5
1m 9s
Build source distribution
16s
Compile the CCD subset for structure.info from the wwPDB CCD
42s
Matrix: Build & Test
Upload documentation to GitHub Releases
0s
Upload package to GitHub Releases & PyPI
0s

Annotations

18 errors and 11 warnings
Build source distribution
Process completed with exit code 1.
Compile the CCD subset for structure.info from the wwPDB CCD
Process completed with exit code 1.
Test interfaces to databases and applications
The process '/usr/share/miniconda3/condabin/mamba' failed with exit code 1
Build documentation
The process '/usr/share/miniconda3/condabin/mamba' failed with exit code 1
Test interface to Muscle 5
Process completed with exit code 1.
Build & Test (cp310-manylinux_x86_64, ubuntu-20.04)
Command ['python', '-m', 'pip', 'wheel', PurePosixPath('/project'), '--wheel-dir=/tmp/cibuildwheel/built_wheel', '--no-deps'] failed with code 1.
Build & Test (cp310-manylinux_x86_64, ubuntu-20.04)
Process completed with exit code 1.
Build & Test (cp311-macosx_arm64, macos-11)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp312-macosx_arm64, macos-11)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp312-macosx_x86_64, macos-11)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp312-win_amd64, windows-2019)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp311-macosx_x86_64, macos-11)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp310-macosx_arm64, macos-11)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp312-manylinux_x86_64, ubuntu-20.04)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp310-macosx_x86_64, macos-11)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp311-win_amd64, windows-2019)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp310-win_amd64, windows-2019)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Build & Test (cp311-manylinux_x86_64, ubuntu-20.04)
The job was canceled because "cp310-manylinux_x86_64_ub" failed.
Compile the CCD subset for structure.info from the wwPDB CCD
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Compile the CCD subset for structure.info from the wwPDB CCD
Mamba support is still experimental and can result in differently solved environments!
Test interfaces to databases and applications
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Test interfaces to databases and applications
Mamba support is still experimental and can result in differently solved environments!
Test interfaces to databases and applications
PackagesNotFoundError: The following packages are not available from current channels: - numpy[version='>=2.0'] Current channels: - https://conda.anaconda.org/anaconda/linux-64 - https://conda.anaconda.org/conda-forge/linux-64 - https://conda.anaconda.org/salilab/linux-64 - https://conda.anaconda.org/bioconda/linux-64 - https://repo.anaconda.com/pkgs/main/linux-64 - https://repo.anaconda.com/pkgs/r/linux-64 To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page.
Build documentation
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Build documentation
Mamba support is still experimental and can result in differently solved environments!
Build documentation
PackagesNotFoundError: The following packages are not available from current channels: - numpy[version='>=2.0'] Current channels: - https://conda.anaconda.org/anaconda/linux-64 - https://conda.anaconda.org/conda-forge/linux-64 - https://conda.anaconda.org/salilab/linux-64 - https://conda.anaconda.org/bioconda/linux-64 - https://repo.anaconda.com/pkgs/main/linux-64 - https://repo.anaconda.com/pkgs/r/linux-64 To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page.
Test interface to Muscle 5
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Test interface to Muscle 5
Mamba support is still experimental and can result in differently solved environments!
Build & Test (cp310-manylinux_x86_64, ubuntu-20.04)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/setup-qemu-action@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.