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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -17,10 +17,16 @@ XLSX = "fdbf4ff8-1666-58a4-91e7-1b58723a45e0" | |
| [compat] | ||
| CSV = "0.10" | ||
| DataFrames = "1" | ||
| Git = "1" | ||
| JuliaFormatter = "1" | ||
| Logging = "1.6" | ||
| Missings = "1" | ||
| Phylo = "0.5" | ||
| PhyloNetworks = "0.16" | ||
| Statistics = "1" | ||
| Pkg = "1.6" | ||
| ResearchSoftwareMetadata = "0.1.1" | ||
| Statistics = "1.6" | ||
| Test = "1.6" | ||
| Unitful = "1" | ||
| XLSX = "0.10" | ||
| julia = "1.6.7" | ||
|
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@@ -34,7 +40,12 @@ email = "[email protected]" | |
| ror = "00vtgdb53" | ||
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| [extras] | ||
| Git = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" | ||
| JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899" | ||
| Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" | ||
| Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" | ||
| ResearchSoftwareMetadata = "58378933-4625-47fa-851e-05ee27d397bd" | ||
| Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" | ||
|
|
||
| [targets] | ||
| test = ["Test"] | ||
| test = ["Git", "JuliaFormatter", "Logging", "Pkg", "ResearchSoftwareMetadata", "Test"] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,158 @@ | ||
| # SPDX-License-Identifier: BSD-2-Clause | ||
|
|
||
| using TraitExtraction | ||
| using Test | ||
| using TraitExtraction | ||
| using Pkg | ||
|
|
||
| rsmd = get(ENV, "RSMD_CROSSWALK", "FALSE") | ||
|
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||
| if rsmd == "FALSE" | ||
| # Normal testing | ||
|
|
||
| # Identify files in test/ that are testing matching files in src/ | ||
| # - src/Source.jl will be matched by test/test_Source.jl | ||
| filebase = String[] | ||
| for (root, dirs, files) in walkdir("../src") | ||
| append!(filebase, | ||
| map(file -> replace(file, r"(.*).jl" => s"\1"), | ||
| filter(file -> occursin(r".*\.jl", file), files))) | ||
| end | ||
|
|
||
| testbase = map(file -> replace(file, r"test_(.*).jl" => s"\1"), | ||
| filter(str -> occursin(r"^test_.*\.jl$", str), readdir())) | ||
|
|
||
| # Identify tests with no matching file | ||
| superfluous = filter(f -> f ∉ filebase, testbase) | ||
| if length(superfluous) > 0 | ||
| println() | ||
| @info "Potentially superfluous tests:" | ||
| for f in superfluous | ||
| println(" + $f.jl") | ||
| end | ||
| println() | ||
| end | ||
|
|
||
| # Identify files with no matching test | ||
| notest = filter(f -> f ∉ testbase, filebase) | ||
| if length(notest) > 0 | ||
| println() | ||
| @info "Potentially missing tests:" | ||
| for f in notest | ||
| println(" - $f.jl") | ||
| end | ||
| println() | ||
| end | ||
|
|
||
| # Identify files in test/ that are testing matching files in ext/ | ||
| # - ext/SourceExt.jl will be matched by test/ext_SourceExt.jl | ||
| filebase = String[] | ||
| for (root, dirs, files) in walkdir("../ext") | ||
| append!(filebase, | ||
| map(file -> replace(file, r"(.*).jl" => s"\1"), | ||
| filter(file -> occursin(r".*\.jl", file), files))) | ||
| end | ||
|
|
||
| extbase = map(file -> replace(file, r"ext_(.*).jl" => s"\1"), | ||
| filter(str -> occursin(r"^ext_.*\.jl$", str), readdir())) | ||
|
|
||
| # Identify tests with no matching file | ||
| superfluous = filter(f -> f ∉ filebase, extbase) | ||
| if length(superfluous) > 0 | ||
| println() | ||
| @info "Potentially superfluous extension tests:" | ||
| for f in superfluous | ||
| println(" + $f.jl") | ||
| end | ||
| println() | ||
| end | ||
|
|
||
| # Identify files with no matching test | ||
| notest = filter(f -> f ∉ extbase, filebase) | ||
| if length(notest) > 0 | ||
| println() | ||
| @info "Potentially missing extension tests:" | ||
| for f in notest | ||
| println(" - $f.jl") | ||
| end | ||
| println() | ||
| end | ||
|
|
||
| @testset "TraitExtraction.jl" begin | ||
| @test isfile(TraitExtraction.path("runtests.jl")) | ||
| println() | ||
| @info "Running tests for files:" | ||
| for t in testbase | ||
| println(" = $t.jl") | ||
| end | ||
| println() | ||
|
|
||
| @info "Running tests..." | ||
| @testset for t in testbase | ||
| fn = "test_$t.jl" | ||
| println(" * Testing $t.jl ...") | ||
| include(fn) | ||
| end | ||
|
|
||
| println() | ||
| @info "Running tests for extensions:" | ||
| for t in extbase | ||
| println(" = $t.jl") | ||
| end | ||
| println() | ||
|
|
||
| @info "Running extension tests..." | ||
| @testset for t in extbase | ||
| fn = "ext_$t.jl" | ||
| println(" * Testing $t.jl extension...") | ||
| include(fn) | ||
| end | ||
| end | ||
|
|
||
| # Identify files that are cross-validating results against other packages | ||
| # test/pkg_Package.jl should validate results against the Package package | ||
|
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| pkgbase = map(file -> replace(file, r"pkg_(.*).jl$" => s"\1"), | ||
| filter(str -> occursin(r"^pkg_.*\.jl$", str), | ||
| readdir())) | ||
|
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||
| if length(pkgbase) > 0 | ||
| @info "Cross validation packages:" | ||
| @testset begin | ||
| for p in pkgbase | ||
| println(" = $p") | ||
| end | ||
| println() | ||
|
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| @testset for p in pkgbase | ||
| fn = "pkg_$p.jl" | ||
| println(" * Validating $p.jl ...") | ||
| include(fn) | ||
| end | ||
| end | ||
| end | ||
| end | ||
|
|
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| if rsmd == "TRUE" || !haskey(ENV, "RUNNER_OS") # Crosswalk runner or local testing | ||
| # Test RSMD crosswalk and other hygene issues | ||
|
|
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| # Identify files that are checking package hygene | ||
| cleanbase = map(file -> replace(file, r"clean_(.*).jl$" => s"\1"), | ||
| filter(str -> occursin(r"^clean_.*\.jl$", str), | ||
| readdir())) | ||
|
|
||
| if length(cleanbase) > 0 | ||
| @info "Crosswalk and clean testing:" | ||
| @testset begin | ||
| for c in cleanbase | ||
| println(" = $c") | ||
| end | ||
| println() | ||
|
|
||
| @testset "TraitExtraction.jl" begin | ||
| # Write your tests here. | ||
| @testset for c in cleanbase | ||
| fn = "clean_$c.jl" | ||
| println(" * Verifying $c.jl ...") | ||
| include(fn) | ||
| end | ||
| end | ||
| end | ||
| end |